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Reference - PMID:22727667 - Intrinsic nucleic acid-binding activity of Chp1 chromodomain is required for heterochromatic gene silencing.

Reference summary

PubMed ID
PMID:22727667
Title
Intrinsic nucleic acid-binding activity of Chp1 chromodomain is required for heterochromatic gene silencing.
Authors
Ishida M, Shimojo H, Hayashi A, Kawaguchi R, Ohtani Y, Uegaki K, Nishimura Y, Nakayama J
Citation
Mol Cell 2012 Jul 27;47(2):228-41
Publication year
2012
Abstract
Centromeric heterochromatin assembly in fission yeast requires the RNAi pathway. Chp1, a chromodomain (CD) protein, forms the Ago1-containing RNA-induced transcriptional silencing (RITS) complex and recruits siRNA-bound RITS to methylated histone H3 lysine 9 (H3K9me) via its CD. Here, we show that the CD of Chp1 (Chp1-CD) possesses unique nucleic acid-binding activities that are essential for heterochromatic gene silencing. Detailed electrophoretic-mobility shift analyses demonstrated that Chp1 binds to RNA via the CD in addition to its central RNA-recognition motif. Interestingly, robust RNA- and DNA-binding activity of Chp1-CD was strongly enhanced when it was bound to H3K9me, which was revealed to involve a positively charged domain within the Chp1-CD by structural analyses. These results demonstrate a role for the CD that provides a link between RNA, DNA, and methylated histone tails to ensure heterochromatic gene silencing.

Annotation

GO biological process

GO:0031508 - pericentric heterochromatin formation

Genes:

GO:0140727 - siRNA-mediated pericentric heterochromatin formation

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GO molecular function

GO:0140463 - chromatin-protein adaptor activity

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GO:0003677 - DNA binding

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GO:0003690 - double-stranded DNA binding

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GO:0062072 - histone H3K9me2/3 reader activity

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GO:0003697 - single-stranded DNA binding

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GO:0003727 - single-stranded RNA binding

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Single locus phenotype

FYPO:0003431 - abolished histone H3K9me binding

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FYPO:0002133 - abolished protein-RNA interaction

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FYPO:0002835 - centromeric outer repeat transcript-derived siRNA absent

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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Genotypes:

FYPO:0001324 - decreased protein level during vegetative growth

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Genotypes:

FYPO:0002360 - normal chromatin silencing at centromere

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Genotypes:

FYPO:0003432 - normal histone H3K9me binding

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Genotypes: