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Reference - PMID:22990236 - Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin.

Reference summary

PubMed ID
PMID:22990236
Title
Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin.
Authors
Shim YS, Choi Y, Kang K, Cho K, Oh S, Lee J, Grewal SI, Lee D
Citation
EMBO J 2012 Nov 28;31(23):4375-87
Publication year
2012
Abstract
The positioning of the nucleosome by ATP-dependent remodellers provides the fundamental chromatin environment for the regulation of diverse cellular processes acting on the underlying DNA. Recently, genome-wide nucleosome mapping has revealed more detailed information on the chromatin-remodelling factors. Here, we report that the Schizosaccharomyces pombe CHD remodeller, Hrp3, is a global regulator that drives proper nucleosome positioning and nucleosome stability. The loss of Hrp3 resulted in nucleosome perturbation across the chromosome, and the production of antisense transcripts in the hrp3Δ cells emphasized the importance of nucleosome architecture for proper transcription. Notably, perturbation of the nucleosome in hrp3 deletion mutant was also associated with destabilization of the DNA-histone interaction and cell cycle-dependent alleviation of heterochromatin silencing. Furthermore, the effect of Hrp3 in the pericentric region was found to be accomplished via a physical interaction with Swi6, and appeared to cooperate with other heterochromatin factors for gene silencing. Taken together, our data indicate that a well-positioned nucleosome by Hrp3 is important for the spatial-temporal control of transcription-associated processes.

Annotation

GO biological process

GO:0006338 - chromatin remodeling

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GO molecular function

GO:0140658 - ATP-dependent chromatin remodeler activity

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GO:0005515 - protein binding

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Multi-locus phenotype

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0003557 - increased antisense RNA level

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FYPO:0005522 - increased forward centromeric outer repeat transcript level

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FYPO:0005518 - increased histone H3-K14 acetylation at protein coding gene during vegetative growth

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FYPO:0004347 - increased histone H3-K9 acetylation at protein coding gene during vegetative growth

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FYPO:0005523 - increased reverse centromeric outer repeat transcript level

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Single locus phenotype

FYPO:0005521 - abnormal nucleosome organization

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FYPO:0004988 - abnormal RNA level oscillation during mitotic cell cycle

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FYPO:0005520 - abolished nucleosome-dependent ATPase activity

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FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

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FYPO:0005524 - decreased nucleosome occupancy at centromere central core

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FYPO:0005525 - decreased nucleosome occupancy at centromere inner repeat

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FYPO:0005516 - decreased nucleosome occupancy in euchromatin

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FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

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FYPO:0003557 - increased antisense RNA level

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FYPO:0005522 - increased forward centromeric outer repeat transcript level

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FYPO:0005518 - increased histone H3-K14 acetylation at protein coding gene during vegetative growth

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FYPO:0004347 - increased histone H3-K9 acetylation at protein coding gene during vegetative growth

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FYPO:0005523 - increased reverse centromeric outer repeat transcript level

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FYPO:0002837 - normal centromeric outer repeat transcript-derived siRNA level

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FYPO:0005517 - normal growth on 6-azauracil

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FYPO:0001164 - normal growth on glucose carbon source

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FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

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FYPO:0000084 - sensitive to 6-azauracil

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