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Reference - PMID:23032292 - Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription.

Reference summary

PubMed ID
PMID:23032292
Title
Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription.
Authors
Hennig BP, Bendrin K, Zhou Y, Fischer T
Citation
EMBO Rep 2012 Nov 06;13(11):997-1003
Publication year
2012
Abstract
Chromatin organization is essential for defining transcription units and maintaining genomic integrity in eukaryotes. In this study, we found that deletion of the Schizosaccharomyces pombe Chd1 chromatin remodelers, hrp1 and hrp3, causes strong, genome-wide accumulation of antisense transcripts. Nucleosome mapping revealed a specific role for Chd1 remodelers in the positioning of nucleosomes in gene coding regions. Other mutations associated with enhanced cryptic transcription activity, such as set2Δ, alp13Δ and FACT complex subunit pob3Δ, did not, or only mildly, affect nucleosome positioning. These data indicate several mechanisms in the repression of cryptic promoter activity in eukaryotic cells.

Annotation

Multi-locus phenotype

FYPO:0000854 - abnormal nucleosome positioning in euchromatin

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FYPO:0004491 - decreased nucleosome occupancy

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FYPO:0003557 - increased antisense RNA level

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FYPO:0001164 - normal growth on glucose carbon source

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FYPO:0003224 - normal histone H3-K14 acetylation during vegetative growth

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FYPO:0003223 - normal histone H3-K9 acetylation during vegetative growth

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FYPO:0005336 - normal level of histone H3 in cell

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Single locus phenotype

FYPO:0000854 - abnormal nucleosome positioning in euchromatin

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Genotypes:

FYPO:0004578 - decreased level of histone H3 in cell

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FYPO:0004491 - decreased nucleosome occupancy

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Genotypes:

FYPO:0003557 - increased antisense RNA level

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FYPO:0005310 - increased histone H3-K14 acetylation during vegetative growth

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FYPO:0000892 - increased histone H3-K9 acetylation during vegetative growth

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FYPO:0001164 - normal growth on glucose carbon source

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Genotypes:

FYPO:0005336 - normal level of histone H3 in cell

Genes:

Genotypes:

FYPO:0000857 - normal nucleosome positioning in euchromatin

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Genotypes: