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Reference - PMID:23084836 - Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation.

Reference summary

PubMed ID
PMID:23084836
Title
Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation.
Authors
Tanaka A, Tanizawa H, Sriswasdi S, Iwasaki O, Chatterjee AG, Speicher DW, Levin HL, Noguchi E, Noma K
Citation
Mol Cell 2012 Nov 30;48(4):532-46
Publication year
2012
Abstract
Complex genome organizations participate in various nuclear processes including transcription, DNA replication, and repair. However, the mechanisms that generate and regulate these functional genome structures remain largely unknown. Here, we describe how the Ku heterodimer complex, which functions in nonhomologous end joining, mediates clustering of long terminal repeat retrotransposons at centromeres in fission yeast. We demonstrate that the CENP-B subunit, Abp1, functions as a recruiter of the Ku complex, which in turn loads the genome-organizing machinery condensin to retrotransposons. Intriguingly, histone H3 lysine 56 (H3K56) acetylation, which functions in DNA replication and repair, interferes with Ku localization at retrotransposons without disrupting Abp1 localization and, as a consequence, dissociates condensin from retrotransposons. This dissociation releases condensin-mediated genomic associations during S phase and upon DNA damage. ATR (ATM- and Rad3-related) kinase mediates the DNA damage response of condensin-mediated genome organization. Our study describes a function of H3K56 acetylation that neutralizes condensin-mediated genome organization.

Annotation

GO cellular component

GO:0099115 - chromosome, subtelomeric region

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GO:0000792 - heterochromatin

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GO:0005721 - pericentric heterochromatin

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Multi-locus phenotype

FYPO:0004890 - increased telomere-nuclear envelope distance during mitosis

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Single locus phenotype

FYPO:0002902 - decreased protein localization to kinetochore during vegetative growth

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FYPO:0007272 - decreased protein localization to nucleoplasm during cellular response to DNA damage

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FYPO:0007261 - decreased telomere tethering at nuclear periphery during vegetative growth

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FYPO:0005545 - decreased Tf body formation

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FYPO:0007270 - decreased Tf body tethering to centromere

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FYPO:0003003 - increased protein localization to kinetochore during vegetative growth

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FYPO:0007271 - increased Tf body tethering to centromere

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FYPO:0001870 - normal centromere clustering at nuclear periphery during vegetative growth

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FYPO:0002335 - normal chromatin silencing

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FYPO:0007269 - normal interphase mitotic telomere clustering during vegetative growth

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