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Reference - PMID:23145048 - A genetic and pharmacological analysis of isoprenoid pathway by LC-MS/MS in fission yeast.

Reference summary

PubMed ID
PMID:23145048
Title
A genetic and pharmacological analysis of isoprenoid pathway by LC-MS/MS in fission yeast.
Authors
Takami T, Fang Y, Zhou X, Jaiseng W, Ma Y, Kuno T
Citation
PLoS One 2012;7(11):e49004
Publication year
2012
Abstract
Currently, statins are the only drugs acting on the mammalian isoprenoid pathway. The mammalian genes in this pathway are not easily amenable to genetic manipulation. Thus, it is difficult to study the effects of the inhibition of various enzymes on the intermediate and final products in the isoprenoid pathway. In fission yeast, antifungal compounds such as azoles and terbinafine are available as inhibitors of the pathway in addition to statins, and various isoprenoid pathway mutants are also available. Here in these mutants, treated with statins or antifungals, we quantified the final and intermediate products of the fission yeast isoprenoid pathway using liquid chromatography-mass spectrometry/mass spectrometry. In hmg1-1, a mutant of the gene encoding 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGR), ergosterol (a final sterol product), and squalene (an intermediate pathway product), were decreased to approximately 80% and 10%, respectively, compared with that of wild-type cells. Consistently in wild-type cells, pravastatin, an HMGR inhibitor decreased ergosterol and squalene, and the effect was more pronounced on squalene. In hmg1-1 mutant and in wild-type cells treated with pravastatin, the decrease in the levels of farnesyl pyrophosphate and geranylgeranyl pyrophosphate respectively was larger than that of ergosterol but was smaller than that of squalene. In Δerg6 or Δsts1 cells, mutants of the genes involved in the last step of the pathway, ergosterol was not detected, and the changes of intermediate product levels were distinct from that of hmg1-1 mutant. Notably, in wild-type cells miconazole and terbinafine only slightly decreased ergosterol level. Altogether, these studies suggest that the pleiotropic phenotypes caused by the hmg1-1 mutation and pravastatin might be due to decreased levels of isoprenoid pyrophosphates or other isoprenoid pathway intermediate products rather than due to a decreased ergosterol level.

Annotation

GO biological process

GO:0006696 - ergosterol biosynthetic process

Genes:

GO:0033386 - geranylgeranyl diphosphate biosynthetic process

Genes:

Single locus phenotype

FYPO:0000082 - decreased cell population growth at high temperature

Genes:

Genotypes:

FYPO:0002321 - decreased cellular ergosterol level

Genes:

Genotypes:

FYPO:0002322 - decreased cellular FPP level

Genes:

Genotypes:

FYPO:0002323 - decreased cellular GGPP level

Genes:

Genotypes:

FYPO:0002324 - decreased cellular lanosterol level

Genes:

Genotypes:

FYPO:0002320 - decreased cellular squalene level

Genes:

Genotypes:

FYPO:0002313 - ergosterol absent from cell

Genes:

Genotypes:

FYPO:0002314 - GGPP absent from cell

Genes:

Genotypes:

FYPO:0002318 - increased cellular ergosterol level

Genes:

Genotypes:

FYPO:0002319 - increased cellular lanosterol level

Genes:

Genotypes:

FYPO:0002317 - increased cellular squalene level

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

Genes:

Genotypes:

FYPO:0002315 - normal cellular FPP level

Genes:

Genotypes:

FYPO:0002316 - normal cellular squalene level

Genes:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

Genes:

Genotypes:

FYPO:0002329 - normal growth on pravastatin

Genes:

Genotypes:

FYPO:0002343 - normal growth on terbinafine

Genes:

Genotypes:

FYPO:0000110 - sensitive to pravastatin

Genes:

Genotypes:

FYPO:0000086 - sensitive to tacrolimus

Genes:

Genotypes:

FYPO:0002328 - sensitive to terbinafine

Genes:

Genotypes:

FYPO:0002060 - viable vegetative cell population

Genes:

Genotypes: