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Reference - PMID:24081329 - Poly(A) tail-mediated gene regulation by opposing roles of Nab2 and Pab2 nuclear poly(A)-binding proteins in pre-mRNA decay.

Reference summary

PubMed ID
PMID:24081329
Title
Poly(A) tail-mediated gene regulation by opposing roles of Nab2 and Pab2 nuclear poly(A)-binding proteins in pre-mRNA decay.
Authors
Grenier St-Sauveur V, Soucek S, Corbett AH, Bachand F
Citation
Mol Cell Biol 2013 Dec;33(23):4718-31
Publication year
2013
Abstract
The 3' end of most eukaryotic transcripts is decorated by poly(A)-binding proteins (PABPs), which influence the fate of mRNAs throughout gene expression. However, despite the fact that multiple PABPs coexist in the nuclei of most eukaryotes, how functional interplay between these nuclear PABPs controls gene expression remains unclear. By characterizing the ortholog of the Nab2/ZC3H14 zinc finger PABP in Schizosaccharomyces pombe, we show here that the two major fission yeast nuclear PABPs, Pab2 and Nab2, have opposing roles in posttranscriptional gene regulation. Notably, we find that Nab2 functions in gene-specific regulation in a manner opposite to that of Pab2. By studying the ribosomal-protein-coding gene rpl30-2, which is negatively regulated by Pab2 via a nuclear pre-mRNA decay pathway that depends on the nuclear exosome subunit Rrp6, we show that Nab2 promotes rpl30-2 expression by acting at the level of the unspliced pre-mRNA. Our data support a model in which Nab2 impedes Pab2/Rrp6-mediated decay by competing with Pab2 for polyadenylated transcripts in the nucleus. The opposing roles of Pab2 and Nab2 reveal that interplay between nuclear PABPs can influence gene regulation.

Annotation

GO biological process

GO:0071028 - nuclear mRNA surveillance

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GO cellular component

GO:0005634 - nucleus

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GO molecular function

GO:0008143 - poly(A) binding

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GO:0036002 - pre-mRNA binding

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Multi-locus phenotype

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0002931 - increased poly(A) tail length

Genes:

Genotypes:

FYPO:0001908 - increased pre-mRNA level

Genes:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

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Genotypes:

Single locus phenotype

FYPO:0002064 - abolished 3'-5'-exoribonuclease activity

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Genotypes:

FYPO:0002926 - abolished poly(A) RNA binding

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Genotypes:

FYPO:0002932 - decreased mature snoRNA level

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Genotypes:

FYPO:0002927 - decreased poly(A) RNA binding

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Genotypes:

FYPO:0002937 - decreased pre-mRNA level

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Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

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Genotypes:

FYPO:0002933 - increased mature snoRNA level

Genes:

Genotypes:

FYPO:0002931 - increased poly(A) tail length

Genes:

Genotypes:

FYPO:0001908 - increased pre-mRNA level

Genes:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0002939 - normal nuclear mRNA catabolic process

Genes:

Genotypes:

FYPO:0002928 - normal poly(A) tail length

Genes:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0002060 - viable vegetative cell population

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Genotypes: