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Reference - PMID:24095277 - Argonaute and Triman generate dicer-independent priRNAs and mature siRNAs to initiate heterochromatin formation.

Reference summary

PubMed ID
PMID:24095277
Title
Argonaute and Triman generate dicer-independent priRNAs and mature siRNAs to initiate heterochromatin formation.
Authors
Marasovic M, Zocco M, Halic M
Citation
Mol Cell 2013 Oct 24;52(2):173-83
Publication year
2013
Abstract
RNAi is a conserved mechanism in which small RNAs induce silencing of complementary targets. We have previously identified priRNAs, a class of Dicer-independent small RNAs in fission yeast. The mechanism by which Dicer-independent small RNAs are generated is not well understood in any species. Here we reconstitute the final steps of priRNA and siRNA biogenesis in vitro. We identify the 3'-5' exonuclease Triman and demonstrate that Argonaute, loaded with longer RNA precursors, recruits Triman to generate mature priRNAs and siRNAs. We show that priRNA and siRNA trimming is required for de novo assembly of heterochromatin at centromeric repeats and the mat locus and for maintenance of heterochromatin at developmental genes. Furthermore, in rrp6Δ cells RNAi targets diverse genes in a Triman-dependent way, indicating that the exosome protects the genome from spurious RNAi. Our results suggest that Argonaute association with RNA degradation products generates priRNAs and triggers RNAi in a process of transcriptome surveillance.

Annotation

GO biological process

GO:1990431 - priRNA 3'-end processing

Genes:

GO:0031048 - regulatory ncRNA-mediated heterochromatin formation

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GO:1990432 - siRNA 3'-end processing

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GO cellular component

GO:0000779 - condensed chromosome, centromeric region

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GO:0005634 - nucleus

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GO molecular function

GO:0000175 - 3'-5'-RNA exonuclease activity

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GO:0004535 - poly(A)-specific ribonuclease activity

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GO:0030674 - protein-macromolecule adaptor activity

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GO:0016891 - RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism

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GO:0003727 - single-stranded RNA binding

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GO:0035197 - siRNA binding

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Single locus phenotype

FYPO:0003098 - abnormal heterochromatin assembly at centromere outer repeat during vegetative growth

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Genotypes:

FYPO:0002064 - abolished 3'-5'-exoribonuclease activity

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Genotypes:

FYPO:0003097 - abolished histone H3-K9 methylation at centromere outer repeat during vegetative growth

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Genotypes:

FYPO:0003094 - decreased centromeric outer repeat transcript level

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Genotypes:

FYPO:0003101 - decreased heterochromatin assembly at protein coding gene

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Genotypes:

FYPO:0003096 - decreased histone H3-K9 methylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0003103 - decreased mRNA-derived small RNA level

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Genotypes:

FYPO:0000835 - decreased protein level

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Genotypes:

FYPO:0002134 - decreased protein-RNA interaction

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Genotypes:

FYPO:0003093 - increased Argonaute-associated RNA length

Genes:

Genotypes:

FYPO:0003102 - increased histone H3-K9 methylation at protein coding gene during vegetative growth

Genes:

Genotypes:

FYPO:0003104 - increased mRNA-derived small RNA level

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Genotypes:

FYPO:0003105 - increased transposable element-derived small RNA level

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Genotypes:

FYPO:0003100 - normal heterochromatin assembly at protein coding gene

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Genotypes:

FYPO:0002357 - normal protein-RNA interaction

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Genotypes: