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Reference - PMID:24100010 - Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast.

Reference summary

PubMed ID
PMID:24100010
Title
Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast.
Authors
DeGennaro CM, Alver BH, Marguerat S, Stepanova E, Davis CP, Bähler J, Park PJ, Winston F
Citation
Mol Cell Biol 2013 Dec;33(24):4779-92
Publication year
2013
Abstract
Spt6 is a highly conserved histone chaperone that interacts directly with both RNA polymerase II and histones to regulate gene expression. To gain a comprehensive understanding of the roles of Spt6, we performed genome-wide analyses of transcription, chromatin structure, and histone modifications in a Schizosaccharomyces pombe spt6 mutant. Our results demonstrate dramatic changes to transcription and chromatin structure in the mutant, including elevated antisense transcripts at >70% of all genes and general loss of the +1 nucleosome. Furthermore, Spt6 is required for marks associated with active transcription, including trimethylation of histone H3 on lysine 4, previously observed in humans but not Saccharomyces cerevisiae, and lysine 36. Taken together, our results indicate that Spt6 is critical for the accuracy of transcription and the integrity of chromatin, likely via its direct interactions with RNA polymerase II and histones.

Annotation

GO biological process

GO:0006366 - transcription by RNA polymerase II

Genes:

GO:0140673 - transcription elongation-coupled chromatin remodeling

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Single locus phenotype

FYPO:0000854 - abnormal nucleosome positioning in euchromatin

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FYPO:0002922 - abolished histone H2B-K119 ubiquitination during vegetative growth

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FYPO:0002919 - abolished histone H3-K36 methylation during vegetative growth

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FYPO:0002917 - abolished histone H3-K4 methylation during vegetative growth

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FYPO:0002910 - decreased protein localization to chromatin at transcribed regions during vegetative growth

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FYPO:0002906 - increased antisense primary transcript splicing

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FYPO:0002913 - increased antisense RNA transcription

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FYPO:0002914 - increased intergenic transcription

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FYPO:0002923 - normal histone H2B-K119 ubiquitination during vegetative growth

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FYPO:0002920 - normal histone H3-K36 methylation during vegetative growth

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