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Reference - PMID:24167631 - Klf1, a C2H2 zinc finger-transcription factor, is required for cell wall maintenance during long-term quiescence in differentiated G0 phase.

Reference summary

PubMed ID
PMID:24167631
Title
Klf1, a C2H2 zinc finger-transcription factor, is required for cell wall maintenance during long-term quiescence in differentiated G0 phase.
Authors
Shimanuki M, Uehara L, Pluskal T, Yoshida T, Kokubu A, Kawasaki Y, Yanagida M
Citation
PLoS One 2013;8(10):e78545
Publication year
2013
Abstract
Fission yeast, Schizoaccharomyces pombe, is a model for studying cellular quiescence. Shifting to a medium that lacks a nitrogen-source induces proliferative cells to enter long-term G0 quiescence. Klf1 is a Krüppel-like transcription factor with a 7-amino acid Cys2His2-type zinc finger motif. The deletion mutant, ∆klf1, normally divides in vegetative medium, but proliferation is not restored after long-term G0 quiescence. Cell biologic, transcriptomic, and metabolomic analyses revealed a unique phenotype of the ∆klf1 mutant in quiescence. Mutant cells had diminished transcripts related to signaling molecules for switching to differentiation; however, proliferative metabolites for cell-wall assembly and antioxidants had significantly increased. Further, the size of ∆klf1 cells increased markedly during quiescence due to the aberrant accumulation of Calcofluor-positive, chitin-like materials beneath the cell wall. After 4 weeks of quiescence, reversible proliferation ability was lost, but metabolism was maintained. Klf1 thus plays a role in G0 phase longevity by enhancing the differentiation signal and suppressing metabolism for growth. If Klf1 is lost, S. pombe fails to maintain a constant cell size and normal cell morphology during quiescence.

Annotation

GO biological process

GO:0000122 - negative regulation of transcription by RNA polymerase II

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GO:0045944 - positive regulation of transcription by RNA polymerase II

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GO:0060237 - regulation of fungal-type cell wall organization

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GO cellular component

GO:0000785 - chromatin

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GO:0005730 - nucleolus

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Qualitative gene expression

PomGeneEx:0000018 - protein level increased

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PomGeneEx:0000011 - RNA level increased

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Single locus phenotype

FYPO:0002955 - abnormal G0 to G1 transition

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FYPO:0004276 - abnormal negative regulation of transcription during G0

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FYPO:0004275 - abnormal positive regulation of transcription during G0

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FYPO:0002944 - decreased RNA level during G0

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FYPO:0002961 - delaminated cell wall during G0

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FYPO:0002951 - increased L-ergothioneine level during G0

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FYPO:0002950 - increased N-acetyl-D-glucosaminate level during G0

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FYPO:0002945 - increased RNA level during G0

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FYPO:0002954 - increased S-adenosyl-3-thiopropylamine level during G0

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FYPO:0002953 - increased S-adenosyl-L-methionine level during G0

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FYPO:0002952 - increased S-methyl-L-ergothioneine level during G0

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FYPO:0001178 - loss of viability upon nitrogen starvation

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FYPO:0002942 - swollen spheroid cell during G0

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FYPO:0002943 - swollen spheroid cell during G0 to G1 transition

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FYPO:0002177 - viable vegetative cell with normal cell morphology

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