PomBase home

Reference - PMID:24210919 - Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.

Reference summary

PubMed ID
PMID:24210919
Title
Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.
Authors
Lee NN, Chalamcharla VR, Reyes-Turcu F, Mehta S, Zofall M, Balachandran V, Dhakshnamoorthy J, Taneja N, Yamanaka S, Zhou M, Grewal SI
Citation
Cell 2013 Nov 21;155(5):1061-74
Publication year
2013
Abstract
The regulation of protein-coding and noncoding RNAs is linked to nuclear processes, including chromatin modifications and gene silencing. However, the mechanisms that distinguish RNAs and mediate their functions are poorly understood. We describe a nuclear RNA-processing network in fission yeast with a core module comprising the Mtr4-like protein, Mtl1, and the zinc-finger protein, Red1. The Mtl1-Red1 core promotes degradation of mRNAs and noncoding RNAs and associates with different proteins to assemble heterochromatin via distinct mechanisms. Mtl1 also forms Red1-independent interactions with evolutionarily conserved proteins named Nrl1 and Ctr1, which associate with splicing factors. Whereas Nrl1 targets transcripts with cryptic introns to form heterochromatin at developmental genes and retrotransposons, Ctr1 functions in processing intron-containing telomerase RNA. Together with our discovery of widespread cryptic introns, including in noncoding RNAs, these findings reveal unique cellular strategies for recognizing regulatory RNAs and coordinating their functions in response to developmental and environmental cues.

Annotation

GO biological process

GO:0180035 - lncRNA processing

Genes:

GO:1902794 - siRNA-independent facultative heterochromatin formation

Genes:

GO:1902795 - siRNA-mediated facultative heterochromatin formation

Genes:

GO:0043144 - sno(s)RNA processing

Genes:

GO cellular component

GO:1990342 - heterochromatin island

Genes:

GO:1990477 - MTREC complex

Genes:

GO:0016604 - nuclear body

Genes:

Multi-locus phenotype

FYPO:0003231 - decreased histone H3-K9 methylation at heterochromatin domain during vegetative growth

Genes:

Genotypes:

FYPO:0003103 - decreased mRNA-derived small RNA level

Genes:

Genotypes:

FYPO:0003236 - decreased transposable element-derived small RNA level

Genes:

Genotypes:

FYPO:0003234 - normal histone H3-K9 methylation at heterochromatin domain during vegetative growth

Genes:

Genotypes:

Single locus phenotype

FYPO:0003231 - decreased histone H3-K9 methylation at heterochromatin domain during vegetative growth

Genes:

Genotypes:

FYPO:0003230 - decreased histone H3-K9 methylation at heterochromatin island during vegetative growth

Genes:

Genotypes:

FYPO:0000872 - decreased histone H3-K9 methylation during vegetative growth

Genes:

Genotypes:

FYPO:0002909 - decreased protein localization to chromatin during vegetative growth

Genes:

Genotypes:

FYPO:0003040 - decreased RNA splicing, via splicosome

Genes:

Genotypes:

FYPO:0004205 - decreased siRNA level

Genes:

Genotypes:

FYPO:0002173 - increased level of meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0002931 - increased poly(A) tail length

Genes:

Genotypes:

FYPO:0001908 - increased pre-mRNA level

Genes:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0003237 - increased RNA splicing at cryptic splice sites

Genes:

Genotypes:

FYPO:0002916 - increased RNA splicing, via spliceosome

Genes:

Genotypes:

FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0003233 - normal histone H3-K9 methylation at heterochromatin island during vegetative growth

Genes:

Genotypes:

FYPO:0002239 - shortened telomeres during vegetative growth

Genes:

Genotypes: