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Reference - PMID:24298023 - Characterization and in vivo functional analysis of the Schizosaccharomyces pombe ICLN gene.

Reference summary

PubMed ID
PMID:24298023
Title
Characterization and in vivo functional analysis of the Schizosaccharomyces pombe ICLN gene.
Authors
Barbarossa A, Antoine E, Neel H, Gostan T, Soret J, Bordonné R
Citation
Mol Cell Biol 2014 Feb;34(4):595-605
Publication year
2014
Abstract
During the early steps of snRNP biogenesis, the survival motor neuron (SMN) complex acts together with the methylosome, an entity formed by the pICln protein, WD45, and the PRMT5 methyltransferase. To expand our understanding of the functional relationship between pICln and SMN in vivo, we performed a genetic analysis of an uncharacterized Schizosaccharomyces pombe pICln homolog. Although not essential, the S. pombe ICln (SpICln) protein is important for optimal yeast cell growth. The human ICLN gene complements the Δicln slow-growth phenotype, demonstrating that the identified SpICln sequence is the bona fide human homolog. Consistent with the role of human pICln inferred from in vitro experiments, we found that the SpICln protein is required for optimal production of the spliceosomal snRNPs and for efficient splicing in vivo. Genetic interaction approaches further demonstrate that modulation of ICln activity is unable to compensate for growth defects of SMN-deficient cells. Using a genome-wide approach and reverse transcription (RT)-PCR validation tests, we also show that splicing is differentially altered in Δicln cells. Our data are consistent with the notion that splice site selection and spliceosome kinetics are highly dependent on the concentration of core spliceosomal components.

Annotation

Complementation

PBO:0091350 - functionally complemented by human CLNS1A

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GO biological process

GO:0045292 - mRNA cis splicing, via spliceosome

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GO cellular component

GO:0005737 - cytoplasm

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GO:0005634 - nucleus

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GO:0005681 - spliceosomal complex

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GO molecular function

GO:0005515 - protein binding

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Single locus phenotype

FYPO:0000082 - decreased cell population growth at high temperature

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FYPO:0001407 - decreased cell population growth on glucose carbon source

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FYPO:0003029 - decreased mRNA splicing, via spliceosome

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FYPO:0001117 - decreased RNA level during vegetative growth

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FYPO:0003041 - decreased snRNA splicing

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FYPO:0003030 - decreased splicing of mRNA introns with low A/U content and polypyrimidine tracts distal to branch site

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Genotypes:

FYPO:0000838 - normal protein localization to nucleus during vegetative growth

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