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Reference - PMID:24713849 - Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex.

Reference summary

PubMed ID
PMID:24713849
Title
Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex.
Authors
Egan ED, Braun CR, Gygi SP, Moazed D
Citation
RNA 2014 Jun;20(6):867-81
Publication year
2014
Abstract
RNA is a central component of gene-silencing pathways that regulate diverse cellular processes. In the fission yeast Schizosaccharomyces pombe, an RNA-based mechanism represses meiotic gene expression during vegetative growth. This pathway depends on the zinc finger protein Red1, which is required to degrade meiotic mRNAs as well as to target histone H3 lysine 9 (H3K9) methylation, a repressive chromatin mark, to a subset of meiotic genes. However, the mechanism of Red1 function is unknown. Here we use affinity purification and mass spectrometry to identify a Red1-containing nuclear RNA silencing (NURS) complex. In addition to Red1, this complex includes the Mtl1, Red5, Ars2, Rmn1, and Iss10 proteins and associates with several other complexes that are involved in either signaling or mediating RNA silencing. By analyzing the effects of gene knockouts and inducible knockdown alleles, we show that NURS subunits regulate RNA degradation and H3K9 methylation at meiotic genes. We also identify roles for individual NURS subunits in interactions with Mmi1, an RNA-binding protein that marks meiotic RNAs for destruction, and the nuclear exosome RNA degradation complex. Finally, we show that the levels of H3K9 methylation at meiotic genes are not sufficient to restrict RNA polymerase II access or repress gene expression during vegetative growth. Our results demonstrate that Red1 partners with other proteins to silence meiotic gene expression at the post-transcriptional level. Conservation of a NURS-like complex in human cells suggests that this pathway plays an ancient and fundamental role in RNA silencing.

Annotation

GO biological process

GO:0033621 - nuclear mRNA surveillance of meiosis-specific transcripts

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GO cellular component

GO:0000785 - chromatin

Genes:

GO:1990342 - heterochromatin island

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GO:1990477 - MTREC complex

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GO:0016604 - nuclear body

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Single locus phenotype

FYPO:0003748 - abnormal protein localization to nuclear body

Genes:

Genotypes:

FYPO:0003094 - decreased centromeric outer repeat transcript level

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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Genotypes:

FYPO:0003230 - decreased histone H3-K9 methylation at heterochromatin island during vegetative growth

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Genotypes:

FYPO:0001645 - decreased protein-protein interaction

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Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

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Genotypes:

FYPO:0003746 - increased histone H3-K9 methylation at heterochromatin island during vegetative growth

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Genotypes:

FYPO:0002960 - increased level of DSR-containing meiotic gene mRNA during vegetative growth

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Genotypes:

FYPO:0002567 - normal centromeric outer repeat transcript level

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Genotypes:

FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0003747 - normal level of DSR-containing meiotic gene mRNA during vegetative growth

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Genotypes:

FYPO:0000091 - sensitive to thiabendazole

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