PomBase home

Reference - PMID:24920274 - Meiotic long non-coding meiRNA accumulates as a dot at its genetic locus facilitated by Mmi1 and plays as a decoy to lure Mmi1.

Reference summary

PubMed ID
PMID:24920274
Title
Meiotic long non-coding meiRNA accumulates as a dot at its genetic locus facilitated by Mmi1 and plays as a decoy to lure Mmi1.
Authors
Shichino Y, Yamashita A, Yamamoto M
Citation
Open Biol 2014 Jun;4(6):140022
Publication year
2014
Abstract
Long non-coding RNAs (lncRNAs) play key roles in the formation of nuclear bodies. In the fission yeast Schizosaccharomyces pombe, a lncRNA species termed meiRNA forms a nuclear dot structure at its own genetic locus, the sme2 locus, with its protein-binding partner Mei2. This dot structure, called Mei2 dot, promotes the progression of meiosis by suppressing Mmi1, a crucial factor involved in the selective elimination of meiosis-specific transcripts. The meiRNA itself is a target of Mmi1-mediated elimination and is supposed to function as a decoy to lure Mmi1. However, detailed mechanisms underlying the formation of Mei2 dot and inactivation of Mmi1 remain ambiguous. Here, we show that the localization of meiRNA, at its genetic locus sme2, depends on its association with Mmi1. We also demonstrate that one of the multiple Mmi1 foci in mitotic cells localizes to the sme2 locus. Furthermore, the overexpression of meiRNA promotes the accumulation of Mmi1 to the sme2 locus even in the absence of Mei2 and reduces the activity of Mmi1. These findings indicate that the retention of meiRNA at its genetic locus is facilitated by Mmi1, which then attracts scattered Mmi1 to inhibit its function.

Annotation

GO biological process

GO:0120271 - negative regulation of nuclear mRNA surveillance of meiosis-specific transcripts

Genes:

GO cellular component

GO:0000785 - chromatin

Genes:

GO:0033620 - Mei2 nuclear dot complex

Genes:

GO:1990251 - nuclear exosome focus

Genes:

GO molecular function

GO:0106222 - lncRNA binding

Genes:

GO:0005515 - protein binding

Genes:

GO:0140311 - protein sequestering activity

Genes:

Multi-locus phenotype

FYPO:0007497 - aggregated nuclear exosome foci

Genes:

Genotypes:

FYPO:0002173 - increased level of meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0003059 - normal RNA localization to chromatin

Genes:

Genotypes:

Single locus phenotype

FYPO:0002962 - abolished protein localization to Mei2 nuclear dot

Genes:

Genotypes:

FYPO:0007496 - abolished protein localization to nuclear exosome focus at sme2 locus

Genes:

Genotypes:

FYPO:0002133 - abolished protein-RNA interaction

Genes:

Genotypes:

FYPO:0000583 - abolished sporulation

Genes:

Genotypes:

FYPO:0007497 - aggregated nuclear exosome foci

Genes:

Genotypes:

FYPO:0002134 - decreased protein-RNA interaction

Genes:

Genotypes:

FYPO:0001152 - decreased RNA level during nitrogen starvation

Genes:

Genotypes:

FYPO:0000584 - decreased sporulation frequency

Genes:

Genotypes:

FYPO:0002173 - increased level of meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0003056 - Mei2 nuclear dot absent from cell

Genes:

Genotypes:

FYPO:0005859 - multiple Mei2 nuclear dots present in cell

Genes:

Genotypes:

FYPO:0007147 - normal Mei2 nuclear dot formation

Genes:

Genotypes:

FYPO:0007495 - normal protein localization to Mei2 nuclear dot

Genes:

Genotypes:

FYPO:0002357 - normal protein-RNA interaction

Genes:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0001996 - RNA absent from cell during nitrogen starvation

Genes:

Genotypes:

FYPO:0003161 - RNA absent from cell during vegetative growth

Genes:

Genotypes:

Warnings

PBO:0000070 - gene structure updated

Genes: