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Reference - PMID:24929437 - The translational landscape of fission-yeast meiosis and sporulation.

Reference summary

PubMed ID
PMID:24929437
Title
The translational landscape of fission-yeast meiosis and sporulation.
Authors
Duncan CD, Mata J
Citation
Nat Struct Mol Biol 2014 Jul;21(7):641-7
Publication year
2014
Abstract
Sexual development in Schizosaccharomyces pombe culminates in meiosis and sporulation. We used ribosome profiling to investigate the translational landscape of this process. We show that the translation efficiency of hundreds of genes is regulated in complex patterns, often correlating with changes in RNA levels. Ribosome-protected fragments show a three-nucleotide periodicity that identifies translated sequences and their reading frame. Using this property, we identified 46 new translated genes and found that 24% of noncoding RNAs are actively translated. We also detected 19 nested antisense genes, in which both DNA strands encode translated mRNAs. Finally, we identified 1,735 translated upstream open reading frames (ORFs) in leader sequences. In S. pombe, in contrast with Saccharomyces cerevisiae, sexual development is not accompanied by large increases in upstream ORF use, thus suggesting that this is an organism-specific adaptation, not a general feature of developmental processes.

Annotation

Genome organisation

PBO:0002475 - alternative splicing

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Taxonomic conservation

PBO:0016878 - Schizosaccharomyces pombe specific

Genes:

PBO:0016885 - Schizosaccharomyces specific

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Warnings

PBO:0000070 - gene structure updated

Genes:

PBO:0000082 - new gene

Genes:

PBO:0032751 - original gene was in a different frame

Genes:

PBO:0032734 - replaced existing SPAC110.05 which was in the wrong frame

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PBO:0091397 - This gene replaced SPAC823.02 which was previously annotated at this locus in the incorrect frame

Genes:

PBO:0091685 - translated non-conserved ORF in low complexity region

Genes: