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Reference - PMID:25122751 - Binding of the transcription factor Atf1 to promoters serves as a barrier to phase nucleosome arrays and avoid cryptic transcription.

Reference summary

PubMed ID
PMID:25122751
Title
Binding of the transcription factor Atf1 to promoters serves as a barrier to phase nucleosome arrays and avoid cryptic transcription.
Authors
García P, Paulo E, Gao J, Wahls WP, Ayté J, Lowy E, Hidalgo E
Citation
Nucleic Acids Res 2014;42(16):10351-9
Publication year
2014
Abstract
Schizosaccharomyces pombe displays a large transcriptional response common to several stress conditions, regulated primarily by the transcription factor Atf1. Atf1-dependent promoters contain especially broad nucleosome depleted regions (NDRs) prior to stress imposition. We show here that basal binding of Atf1 to these promoters competes with histones to create wider NDRs at stress genes. Moreover, deletion of atf1 results in nucleosome disorganization specifically at stress coding regions and derepresses antisense transcription. Our data indicate that the transcription factor binding to promoters acts as an effective barrier to fix the +1 nucleosome and phase downstream nucleosome arrays to prevent cryptic transcription.

Annotation

GO biological process

GO:0060195 - negative regulation of antisense RNA transcription

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Multi-locus phenotype

FYPO:0003813 - normal nucleosome positioning at stress response genes

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Single locus phenotype

FYPO:0000853 - abnormal nucleosome positioning

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FYPO:0003812 - abnormal nucleosome positioning at stress response genes

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FYPO:0001116 - decreased RNA level during cellular response to hydrogen peroxide

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FYPO:0002913 - increased antisense RNA transcription

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FYPO:0003909 - increased nucleosome occupancy at CRE site

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FYPO:0003908 - increased stress response gene antisense RNA level

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FYPO:0003813 - normal nucleosome positioning at stress response genes

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