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Reference - PMID:25240800 - The RNA exosome promotes transcription termination of backtracked RNA polymerase II.

Reference summary

PubMed ID
PMID:25240800
Title
The RNA exosome promotes transcription termination of backtracked RNA polymerase II.
Authors
Lemay JF, Larochelle M, Marguerat S, Atkinson S, Bähler J, Bachand F
Citation
Nat Struct Mol Biol 2014 Oct;21(10):919-26
Publication year
2014
Abstract
The exosome is an RNA-decay complex that constantly monitors transcription and contributes to post-transcriptional turnover of faulty mRNAs. Yet how nuclear RNA surveillance by the exosome is coordinated with transcription is still unknown. Here we show that the RNA exosome of Schizosaccharomyces pombe can target the transcription machinery by terminating transcription events associated with paused and backtracked RNA polymerase II (RNAPII); this is contrary to the notion that the exosome acts exclusively on RNAs that have been released by RNAPII. Our data support a mechanism by which RNAPII backtracking provides a free RNA 3' end for the core exosome, which results in transcription termination with concomitant degradation of the associated transcript. These findings uncover a mechanism of cotranscriptional RNA surveillance whereby termination of transcription by the exosome prevents formation of aberrant readthrough RNAs and transcriptional interference at neighboring genes.

Annotation

GO biological process

GO:0071028 - nuclear mRNA surveillance

Genes:

GO:0071031 - nuclear mRNA surveillance of mRNA 3'-end processing

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GO:0071027 - nuclear RNA surveillance

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GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent

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GO cellular component

GO:0000785 - chromatin

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GO:0031499 - TRAMP complex

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GO molecular function

GO:0000175 - 3'-5'-RNA exonuclease activity

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Multi-locus phenotype

FYPO:0003049 - increased transcriptional readthrough

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Genotypes:

Single locus phenotype

FYPO:0004811 - abnormal termination of RNA polymerase II transcription

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Genotypes:

FYPO:0003700 - increased snoRNA primary transcript level

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Genotypes:

FYPO:0003049 - increased transcriptional readthrough

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Genotypes:

FYPO:0006279 - normal termination of RNA polymerase II transcription

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Genotypes:

FYPO:0001855 - normal transcription during vegetative growth

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Genotypes:

FYPO:0002085 - normal vegetative cell growth

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Genotypes:

FYPO:0001234 - slow vegetative cell population growth

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