PomBase home

Reference - PMID:25404562 - Conservation of an intricate circuit for crucial modifications of the tRNAPhe anticodon loop in eukaryotes.

Reference summary

PubMed ID
PMID:25404562
Title
Conservation of an intricate circuit for crucial modifications of the tRNAPhe anticodon loop in eukaryotes.
Authors
Guy MP, Phizicky EM
Citation
RNA 2015 Jan;21(1):61-74
Publication year
2015
Abstract
Post-transcriptional tRNA modifications are critical for efficient and accurate translation, and have multiple different roles. Lack of modifications often leads to different biological consequences in different organisms, and in humans is frequently associated with neurological disorders. We investigate here the conservation of a unique circuitry for anticodon loop modification required for healthy growth in the yeast Saccharomyces cerevisiae. S. cerevisiae Trm7 interacts separately with Trm732 and Trm734 to 2'-O-methylate three substrate tRNAs at anticodon loop residues C₃₂ and N₃₄, and these modifications are required for efficient wybutosine formation at m(1)G₃₇ of tRNA(Phe). Moreover, trm7Δ and trm732Δ trm734Δ mutants grow poorly due to lack of functional tRNA(Phe). It is unknown if this circuitry is conserved and important for tRNA(Phe) modification in other eukaryotes, but a likely human TRM7 ortholog is implicated in nonsyndromic X-linked intellectual disability. We find that the distantly related yeast Schizosaccharomyces pombe has retained this circuitry for anticodon loop modification, that S. pombe trm7Δ and trm734Δ mutants have more severe phenotypes than the S. cerevisiae mutants, and that tRNA(Phe) is the major biological target. Furthermore, we provide evidence that Trm7 and Trm732 function is widely conserved throughout eukaryotes, since human FTSJ1 and THADA, respectively, complement growth defects of S. cerevisiae trm7Δ and trm732Δ trm734Δ mutants by modifying C₃₂ of tRNA(Phe), each working with the corresponding S. cerevisiae partner protein. These results suggest widespread importance of 2'-O-methylation of the tRNA anticodon loop, implicate tRNA(Phe) as the crucial substrate, and suggest that this modification circuitry is important for human neuronal development.

Annotation

GO biological process

GO:0030488 - tRNA methylation

Genes:

GO molecular function

GO:0030234 - enzyme regulator activity

Genes:

GO:0106339 - tRNA (cytidine(32)-2'-O-ribose)-methyltransferase activity

Genes:

GO:0106340 - tRNA (guanosine(34)-2'-O-ribose)-methyltransferase activity

Genes:

Multi-locus phenotype

FYPO:0002060 - viable vegetative cell population

Genes:

Genotypes:

Single locus phenotype

FYPO:0007021 - abolished tRNA cytosine 2'-O-methylation

Genes:

Genotypes:

FYPO:0007022 - abolished tRNA guanosine 2'-O-methylation

Genes:

Genotypes:

FYPO:0007024 - decreased tRNA guanosine 7-methylation

Genes:

Genotypes:

FYPO:0007025 - decreased tRNA guanosine N2-methylation

Genes:

Genotypes:

FYPO:0007026 - decreased tRNA wybutosine biosynthesis

Genes:

Genotypes:

FYPO:0007023 - increased tRNA guanosine 1-methylation

Genes:

Genotypes:

FYPO:0007018 - normal tRNA guanosine 2'-O-methylation

Genes:

Genotypes:

FYPO:0007019 - normal tRNA guanosine 7-methylation

Genes:

Genotypes:

FYPO:0007020 - normal tRNA guanosine N2-methylation

Genes:

Genotypes:

FYPO:0007017 - normal tRNA pseudouridylation

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

Genes:

Genotypes: