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Reference - PMID:25417108 - Dicer promotes transcription termination at sites of replication stress to maintain genome stability.

Reference summary

PubMed ID
PMID:25417108
Title
Dicer promotes transcription termination at sites of replication stress to maintain genome stability.
Authors
Castel SE, Ren J, Bhattacharjee S, Chang AY, Sánchez M, Valbuena A, Antequera F, Martienssen RA
Citation
Cell 2014 Oct 23;159(3):572-83
Publication year
2014
Abstract
Nuclear RNAi is an important regulator of transcription and epigenetic modification, but the underlying mechanisms remain elusive. Using a genome-wide approach in the fission yeast S. pombe, we have found that Dcr1, but not other components of the canonical RNAi pathway, promotes the release of Pol II from the 3? end of highly transcribed genes, and, surprisingly, from antisense transcription of rRNA and tRNA genes, which are normally transcribed by Pol I and Pol III. These Dcr1-terminated loci correspond to sites of replication stress and DNA damage, likely resulting from transcription-replication collisions. At the rDNA loci, release of Pol II facilitates DNA replication and prevents homologous recombination, which would otherwise lead to loss of rDNA repeats especially during meiosis. Our results reveal a novel role for Dcr1-mediated transcription termination in genome maintenance and may account for widespread regulation of genome stability by nuclear RNAi in higher eukaryotes.

Annotation

GO biological process

GO:0006363 - termination of RNA polymerase I transcription

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GO:0006369 - termination of RNA polymerase II transcription

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GO:0006386 - termination of RNA polymerase III transcription

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Multi-locus phenotype

FYPO:0002061 - inviable vegetative cell population

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Single locus phenotype

FYPO:0004814 - abnormal termination of RNA polymerase II transcription at highly transcribed protein-coding genes

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FYPO:0004812 - abnormal termination of RNA polymerase II transcription at rDNA

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FYPO:0004813 - abnormal termination of RNA polymerase II transcription at tDNA

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FYPO:0003103 - decreased mRNA-derived small RNA level

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FYPO:0004821 - decreased number of Rad52 foci at highly transcribed protein-coding genes

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FYPO:0004817 - decreased rDNA antisense small RNA level

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FYPO:0004818 - decreased tDNA antisense small RNA level

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FYPO:0002980 - increased chromatin binding

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FYPO:0004822 - increased number of R-loops at rDNA

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FYPO:0004819 - increased number of Rad52 foci at rDNA replication origins

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FYPO:0004820 - increased number of Rad52 foci at rDNA replication pause sites

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FYPO:0004815 - increased rDNA antisense siRNA level

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FYPO:0004824 - normal rDNA copy number

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FYPO:0004826 - progressively decreasing rDNA copy number during successive meiotic generations

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FYPO:0004825 - stably decreased rDNA copy number during vegetative growth

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