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Reference - PMID:25798942 - The Fun30 chromatin remodeler Fft3 controls nuclear organization and chromatin structure of insulators and subtelomeres in fission yeast.

Reference summary

PubMed ID
PMID:25798942
Title
The Fun30 chromatin remodeler Fft3 controls nuclear organization and chromatin structure of insulators and subtelomeres in fission yeast.
Authors
Steglich B, Strålfors A, Khorosjutina O, Persson J, Smialowska A, Javerzat JP, Ekwall K
Citation
PLoS Genet 2015 Mar;11(3):e1005101
Publication year
2015
Abstract
In eukaryotic cells, local chromatin structure and chromatin organization in the nucleus both influence transcriptional regulation. At the local level, the Fun30 chromatin remodeler Fft3 is essential for maintaining proper chromatin structure at centromeres and subtelomeres in fission yeast. Using genome-wide mapping and live cell imaging, we show that this role is linked to controlling nuclear organization of its targets. In fft3∆ cells, subtelomeres lose their association with the LEM domain protein Man1 at the nuclear periphery and move to the interior of the nucleus. Furthermore, genes in these domains are upregulated and active chromatin marks increase. Fft3 is also enriched at retrotransposon-derived long terminal repeat (LTR) elements and at tRNA genes. In cells lacking Fft3, these sites lose their peripheral positioning and show reduced nucleosome occupancy. We propose that Fft3 has a global role in mediating association between specific chromatin domains and the nuclear envelope.

Annotation

GO biological process

GO:0140698 - attachment of telomeric heterochromatin to nuclear envelope

Genes:

GO:0006338 - chromatin remodeling

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GO cellular component

GO:0099115 - chromosome, subtelomeric region

Genes:

GO:0000792 - heterochromatin

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GO molecular function

GO:0005515 - protein binding

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Multi-locus phenotype

FYPO:0004790 - abnormal telomere-nuclear envelope distance during vegetative growth

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Genotypes:

Single locus phenotype

FYPO:0004790 - abnormal telomere-nuclear envelope distance during vegetative growth

Genes:

Genotypes:

FYPO:0004481 - abolished cell population growth at high temperature

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Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

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Genotypes:

FYPO:0005915 - decreased nucleosome occupancy at 5S rRNA genes

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Genotypes:

FYPO:0005932 - decreased nucleosome occupancy at long terminal repeat

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Genotypes:

FYPO:0005916 - decreased nucleosome occupancy at tRNA genes

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Genotypes:

FYPO:0004345 - decreased protein localization to chromatin at long terminal repeat

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Genotypes:

FYPO:0005918 - decreased protein localization to subtelomeric heterochromatin

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Genotypes:

FYPO:0005316 - increased histone H4-K12 acetylation at subtelomere during vegetative growth

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Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

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Genotypes:

FYPO:0005087 - normal protein localization to chromatin at tRNA gene

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Genotypes:

FYPO:0004924 - normal telomere tethering at nuclear periphery during vegetative growth

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Genotypes: