PomBase home

Reference - PMID:26152587 - TORC1 Regulates Developmental Responses to Nitrogen Stress via Regulation of the GATA Transcription Factor Gaf1.

Reference summary

PubMed ID
PMID:26152587
Title
TORC1 Regulates Developmental Responses to Nitrogen Stress via Regulation of the GATA Transcription Factor Gaf1.
Authors
Laor D, Cohen A, Kupiec M, Weisman R
Citation
mBio 2015 Jul 07;6(4):e00959
Publication year
2015
Abstract
The TOR (target of rapamycin [sirolimus]) is a universally conserved kinase that couples nutrient availability to cell growth. TOR complex 1 (TORC1) in Schizosaccharomyces pombe positively regulates growth in response to nitrogen availability while suppressing cellular responses to nitrogen stress. Here we report the identification of the GATA transcription factor Gaf1 as a positive regulator of the nitrogen stress-induced gene isp7(+), via three canonical GATA motifs. We show that under nitrogen-rich conditions, TORC1 positively regulates the phosphorylation and cytoplasmic retention of Gaf1 via the PP2A-like phosphatase Ppe1. Under nitrogen stress conditions when TORC1 is inactivated, Gaf1 becomes dephosphorylated and enters the nucleus. Gaf1 was recently shown to negatively regulate the transcription induction of ste11(+), a major regulator of sexual development. Our findings support a model of a two-faceted role of Gaf1 during nitrogen stress. Gaf1 positively regulates genes that are induced early in the response to nitrogen stress, while inhibiting later responses, such as sexual development. Taking these results together, we identify Gaf1 as a novel target for TORC1 signaling and a step-like mechanism to modulate the nitrogen stress response. TOR complex 1 (TORC1) is an evolutionary conserved protein complex that positively regulates growth and proliferation, while inhibiting starvation responses. In fission yeast, the activity of TORC1 is downregulated in response to nitrogen starvation, and cells reprogram their transcriptional profile and prepare for sexual development. We identify Gaf1, a GATA-like transcription factor that regulates transcription and sexual development in response to starvation, as a downstream target for TORC1 signaling. Under nitrogen-rich conditions, TORC1 positively regulates the phosphorylation and cytoplasmic retention of Gaf1 via the PP2A-like phosphatase Ppe1. Under nitrogen stress conditions when TORC1 is inactivated, Gaf1 becomes dephosphorylated and enters the nucleus. Budding yeast TORC1 regulates GATA transcription factors via the phosphatase Sit4, a structural homologue of Ppe1. Thus, the TORC1-GATA transcription module appears to be conserved in evolution and may also be found in higher eukaryotes.

Annotation

GO biological process

GO:0045944 - positive regulation of transcription by RNA polymerase II

Genes:

GO cellular component

GO:0005737 - cytoplasm

Genes:

GO:0005634 - nucleus

Genes:

GO molecular function

GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific

Genes:

Modification

MOD:00696 - phosphorylated residue

Genes:

Multi-locus phenotype

FYPO:0006548 - increased gene expression

Genes:

Genotypes:

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

Genes:

PomGeneEx:0000014 - RNA present

Genes:

Single locus phenotype

FYPO:0003252 - abolished cell population growth on proline nitrogen source

Genes:

Genotypes:

FYPO:0000249 - decreased cell population growth on ammonia nitrogen source

Genes:

Genotypes:

FYPO:0000250 - decreased cell population growth on proline nitrogen source

Genes:

Genotypes:

FYPO:0006549 - decreased gene expression

Genes:

Genotypes:

FYPO:0006550 - decreased gene expression during nitrogen starvation

Genes:

Genotypes:

FYPO:0004457 - decreased protein localization to nucleus during nitrogen starvation

Genes:

Genotypes:

FYPO:0001838 - decreased protein phosphorylation during vegetative growth

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0006548 - increased gene expression

Genes:

Genotypes:

FYPO:0006552 - increased protein localization to cytoplasm

Genes:

Genotypes:

FYPO:0001130 - increased protein localization to nucleus during vegetative growth

Genes:

Genotypes:

FYPO:0002681 - increased protein phosphorylation during nitrogen starvation

Genes:

Genotypes:

FYPO:0000243 - normal growth on proline nitrogen source

Genes:

Genotypes:

FYPO:0000644 - normal protein localization during vegetative growth

Genes:

Genotypes:

FYPO:0006554 - normal protein localization to nucleus during nitrogen starvation

Genes:

Genotypes:

FYPO:0005035 - normal protein phosphorylation during nitrogen starvation

Genes:

Genotypes:

FYPO:0000776 - normal protein phosphorylation during vegetative growth

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes:

FYPO:0003161 - RNA absent from cell during vegetative growth

Genes:

Genotypes: