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Reference - PMID:26167880 - SR protein kinases promote splicing of nonconsensus introns.

Reference summary

PubMed ID
PMID:26167880
Title
SR protein kinases promote splicing of nonconsensus introns.
Authors
Lipp JJ, Marvin MC, Shokat KM, Guthrie C
Citation
Nat Struct Mol Biol 2015 Aug;22(8):611-7
Publication year
2015
Abstract
Phosphorylation of the spliceosome is essential for RNA splicing, yet how and to what extent kinase signaling affects splicing have not been defined on a genome-wide basis. Using a chemical genetic approach, we show in Schizosaccharomyces pombe that the SR protein kinase Dsk1 is required for efficient splicing of introns with suboptimal splice sites. Systematic substrate mapping in fission yeast and human cells revealed that SRPKs target evolutionarily conserved spliceosomal proteins, including the branchpoint-binding protein Bpb1 (SF1 in humans), by using an RXXSP consensus motif for substrate recognition. Phosphorylation of SF1 increases SF1 binding to introns with nonconsensus splice sites in vitro, and mutation of such sites to consensus relieves the requirement for Dsk1 and phosphorylated Bpb1 in vivo. Modulation of splicing efficiency through kinase signaling pathways may allow tuning of gene expression in response to environmental and developmental cues.

Annotation

GO biological process

GO:0000348 - mRNA branch site recognition

Genes:

GO:0045292 - mRNA cis splicing, via spliceosome

Genes:

GO:0048026 - positive regulation of mRNA splicing, via spliceosome

Genes:

GO molecular function

GO:0004674 - protein serine/threonine kinase activity

Genes:

Modification

MOD:00046 - O-phospho-L-serine

Genes:

Single locus phenotype

FYPO:0002678 - abolished protein phosphorylation

Genes:

Genotypes:

FYPO:0003029 - decreased mRNA splicing, via spliceosome

Genes:

Genotypes: