PomBase home

Reference - PMID:26366556 - Fission Yeast CSL Transcription Factors: Mapping Their Target Genes and Biological Roles.

Reference summary

PubMed ID
PMID:26366556
Title
Fission Yeast CSL Transcription Factors: Mapping Their Target Genes and Biological Roles.
Authors
Převorovský M, Oravcová M, Tvarůžková J, Zach R, Folk P, Půta F, Bähler J
Citation
PLoS One 2015;10(9):e0137820
Publication year
2015
Abstract
Cbf11 and Cbf12, the fission yeast CSL transcription factors, have been implicated in the regulation of cell-cycle progression, but no specific roles have been described and their target genes have been only partially mapped. Using a combination of transcriptome profiling under various conditions and genome-wide analysis of CSL-DNA interactions, we identify genes regulated directly and indirectly by CSL proteins in fission yeast. We show that the expression of stress-response genes and genes that are expressed periodically during the cell cycle is deregulated upon genetic manipulation of cbf11 and/or cbf12. Accordingly, the coordination of mitosis and cytokinesis is perturbed in cells with genetically manipulated CSL protein levels, together with other specific defects in cell-cycle progression. Cbf11 activity is nutrient-dependent and Δcbf11-associated defects are mitigated by inactivation of the protein kinase A (Pka1) and stress-activated MAP kinase (Sty1p38) pathways. Furthermore, Cbf11 directly regulates a set of lipid metabolism genes and Δcbf11 cells feature a stark decrease in the number of storage lipid droplets. Our results provide a framework for a more detailed understanding of the role of CSL proteins in the regulation of cell-cycle progression in fission yeast.

Annotation

GO biological process

GO:0019216 - regulation of lipid metabolic process

Genes:

GO cellular component

GO:0000785 - chromatin

Genes:

GO molecular function

GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific

Genes:

GO:0043565 - sequence-specific DNA binding

Genes:

Multi-locus phenotype

FYPO:0006822 - viable small vegetative cell with normal cell growth rate

Genes:

Genotypes:

Single locus phenotype

FYPO:0004363 - altered level of stress responsive gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0003165 - cut with abnormal chromosome segregation

Genes:

Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

Genes:

Genotypes:

FYPO:0004880 - decreased level of lipid metabolism gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0000223 - elongated multiseptate vegetative cell

Genes:

Genotypes:

FYPO:0001122 - elongated vegetative cell

Genes:

Genotypes:

FYPO:0000650 - increased septation index

Genes:

Genotypes:

FYPO:0002552 - lipid droplets present in decreased numbers

Genes:

Genotypes:

FYPO:0001903 - normal septation index

Genes:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

Genes:

Genotypes:

FYPO:0007474 - variable cell size at division

Genes:

Genotypes:

FYPO:0006822 - viable small vegetative cell with normal cell growth rate

Genes:

Genotypes: