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Reference - PMID:26412298 - A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.

Reference summary

PubMed ID
PMID:26412298
Title
A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.
Authors
Beckley JR, Chen JS, Yang Y, Peng J, Gould KL
Citation
Mol Cell Proteomics 2015 Dec;14(12):3132-41
Publication year
2015
Abstract
Deubiquitinating enzymes (DUBs), cysteine or metallo- proteases that cleave ubiquitin chains or protein conjugates, are present in nearly every cellular compartment, with overlapping protein domain structure, localization, and functions. We discovered a cohort of DUBs that are involved in membrane trafficking (ubp4, ubp5, ubp9, ubp15, and sst2) and found that loss of all five of these DUBs but not loss of any combination of four, significantly impacted cell viability in the fission yeast Schizosaccharomyces pombe (1). Here, we delineate the collective and individual functions and activities of these five conserved DUBs using comparative proteomics, biochemistry, and microscopy. We find these five DUBs are degenerate rather than redundant at the levels of cell morphology, substrate selectivity, ubiquitin chain specificity, and cell viability under stress. These studies reveal the complexity of interplay among these enzymes, providing a foundation for understanding DUB biology and providing another example of how cells utilize degeneracy to improve survival.

Annotation

GO molecular function

GO:0061578 - K63-linked deubiquitinase activity

Genes:

GO:0140492 - metal-dependent deubiquitinase activity

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Modification

MOD:01148 - ubiquitinylated lysine

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Multi-locus phenotype

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0002021 - dispersed actin cortical patch localization during vegetative growth

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Genotypes:

FYPO:0000650 - increased septation index

Genes:

Genotypes:

FYPO:0000095 - sensitive to bleomycin

Genes:

Genotypes:

FYPO:0000096 - sensitive to cadmium

Genes:

Genotypes:

FYPO:0001188 - sensitive to Calcofluor White

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Genotypes:

FYPO:0003840 - sensitive to carbendazim

Genes:

Genotypes:

FYPO:0000104 - sensitive to cycloheximide

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Genotypes:

FYPO:0004512 - sensitive to EGTA

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Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000107 - sensitive to latrunculin A

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Genotypes:

FYPO:0001214 - sensitive to potassium chloride

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FYPO:0000841 - sensitive to sodium dodecyl sulfate

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Genotypes:

FYPO:0000112 - sensitive to sorbitol

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Genotypes:

FYPO:0000091 - sensitive to thiabendazole

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Genotypes:

FYPO:0000281 - small vacuoles present in increased numbers during vegetative growth

Genes:

Genotypes:

FYPO:0000024 - stubby vegetative cell

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Genotypes:

Single locus phenotype

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0000095 - sensitive to bleomycin

Genes:

Genotypes:

FYPO:0001188 - sensitive to Calcofluor White

Genes:

Genotypes:

FYPO:0003840 - sensitive to carbendazim

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000107 - sensitive to latrunculin A

Genes:

Genotypes:

FYPO:0000024 - stubby vegetative cell

Genes:

Genotypes:

FYPO:0002104 - viable vegetative cell with normal cell shape

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Genotypes: