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Reference - PMID:26424849 - Dynamic modulation of Dnmt2-dependent tRNA methylation by the micronutrient queuine.

Reference summary

PubMed ID
PMID:26424849
Title
Dynamic modulation of Dnmt2-dependent tRNA methylation by the micronutrient queuine.
Authors
Müller M, Hartmann M, Schuster I, Bender S, Thüring KL, Helm M, Katze JR, Nellen W, Lyko F, Ehrenhofer-Murray AE
Citation
Nucleic Acids Res 2015 Dec 15;43(22):10952-62
Publication year
2015
Abstract
Dnmt2 enzymes are cytosine-5 methyltransferases that methylate C38 of several tRNAs. We report here that the activities of two Dnmt2 homologs, Pmt1 from Schizosaccharomyces pombe and DnmA from Dictyostelium discoideum, are strongly stimulated by prior queuosine (Q) modification of the substrate tRNA. In vivo tRNA methylation levels were stimulated by growth of cells in queuine-containing medium; in vitro Pmt1 activity was enhanced on Q-containing RNA; and queuine-stimulated in vivo methylation was abrogated by the absence of the enzyme that inserts queuine into tRNA, eukaryotic tRNA-guanine transglycosylase. Global analysis of tRNA methylation in S. pombe showed a striking selectivity of Pmt1 for tRNA(Asp) methylation, which distinguishes Pmt1 from other Dnmt2 homologs. The present analysis also revealed a novel Pmt1- and Q-independent tRNA methylation site in S. pombe, C34 of tRNA(Pro). Notably, queuine is a micronutrient that is scavenged by higher eukaryotes from the diet and gut microflora. This work therefore reveals an unanticipated route by which the environment can modulate tRNA modification in an organism.

Annotation

GO biological process

GO:0002099 - tRNA wobble guanine modification

Genes:

GO molecular function

GO:0016428 - tRNA (cytidine-N5)-methyltransferase activity

Genes:

GO:0008479 - tRNA-guanosine(34) queuine transglycosylase activity

Genes:

Multi-locus phenotype

FYPO:0001768 - abolished tRNA-Asp C38 methylation

Genes:

Genotypes:

Single locus phenotype

FYPO:0001768 - abolished tRNA-Asp C38 methylation

Genes:

Genotypes: