PomBase home

Reference - PMID:26518661 - The Paf1 complex factors Leo1 and Paf1 promote local histone turnover to modulate chromatin states in fission yeast.

Reference summary

PubMed ID
PMID:26518661
Title
The Paf1 complex factors Leo1 and Paf1 promote local histone turnover to modulate chromatin states in fission yeast.
Authors
Sadeghi L, Prasad P, Ekwall K, Cohen A, Svensson JP
Citation
EMBO Rep 2015 Dec;16(12):1673-87
Publication year
2015
Abstract
The maintenance of open and repressed chromatin states is crucial for the regulation of gene expression. To study the genes involved in maintaining chromatin states, we generated a random mutant library in Schizosaccharomyces pombe and monitored the silencing of reporter genes inserted into the euchromatic region adjacent to the heterochromatic mating type locus. We show that Leo1-Paf1 [a subcomplex of the RNA polymerase II-associated factor 1 complex (Paf1C)] is required to prevent the spreading of heterochromatin into euchromatin by mapping the heterochromatin mark H3K9me2 using high-resolution genomewide ChIP (ChIP-exo). Loss of Leo1-Paf1 increases heterochromatin stability at several facultative heterochromatin loci in an RNAi-independent manner. Instead, deletion of Leo1 decreases nucleosome turnover, leading to heterochromatin stabilization. Our data reveal that Leo1-Paf1 promotes chromatin state fluctuations by enhancing histone turnover.

Annotation

GO biological process

GO:0033696 - heterochromatin boundary formation

Genes:

Multi-locus phenotype

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

Genes:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0006994 - increased chromatin silencing at centromere otr1L

Genes:

Genotypes:

FYPO:0006995 - normal chromatin silencing at centromere inner repeat

Genes:

Genotypes:

FYPO:0007001 - normal histone exchange at pericentric heterochromatin

Genes:

Genotypes:

FYPO:0007002 - normal histone exchange at silent mating-type cassette

Genes:

Genotypes:

FYPO:0007000 - normal histone exchange at transposable element

Genes:

Genotypes:

FYPO:0006989 - normal histone H3-K9 dimethylation at transposable element during vegetative growth

Genes:

Genotypes:

FYPO:0001839 - normal minichromosome loss

Genes:

Genotypes:

FYPO:0006986 - normal spatial extent of heterochromatin assembly to boundary element IRL

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes:

Single locus phenotype

FYPO:0003094 - decreased centromeric outer repeat transcript level

Genes:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

Genes:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0004748 - decreased histone exchange at pericentric heterochromatin

Genes:

Genotypes:

FYPO:0007004 - decreased histone exchange at protein coding gene during vegetative growth

Genes:

Genotypes:

FYPO:0006997 - decreased histone exchange at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0006998 - decreased histone exchange at transposable element during vegetative growth

Genes:

Genotypes:

FYPO:0005226 - decreased level of ubiquitinated protein in cell

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0006985 - heterochromatin assembly beyond boundary element IRL

Genes:

Genotypes:

FYPO:0003557 - increased antisense RNA level

Genes:

Genotypes:

FYPO:0004376 - increased chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0006268 - increased histone H3-K9 dimethylation at protein coding gene during vegetative growth

Genes:

Genotypes:

FYPO:0006987 - increased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0004138 - increased histone H3-K9 dimethylation at telomere during vegetative growth

Genes:

Genotypes:

FYPO:0006988 - increased histone H3-K9 dimethylation at transposable element during vegetative growth

Genes:

Genotypes:

FYPO:0005371 - increased linear minichromosome loss during vegetative growth

Genes:

Genotypes:

FYPO:0006990 - increased spatial extent of heterochromatin assembly at protein coding gene

Genes:

Genotypes:

FYPO:0006996 - normal antisense RNA level

Genes:

Genotypes:

FYPO:0006995 - normal chromatin silencing at centromere inner repeat

Genes:

Genotypes:

FYPO:0006992 - normal chromatin silencing at centromere otr1R

Genes:

Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0007001 - normal histone exchange at pericentric heterochromatin

Genes:

Genotypes:

FYPO:0007002 - normal histone exchange at silent mating-type cassette

Genes:

Genotypes:

FYPO:0007000 - normal histone exchange at transposable element

Genes:

Genotypes:

FYPO:0007003 - normal histone exchange at tRNA genes

Genes:

Genotypes:

FYPO:0000862 - normal histone H3-K9 dimethylation at centromere during vegetative growth

Genes:

Genotypes:

FYPO:0006989 - normal histone H3-K9 dimethylation at transposable element during vegetative growth

Genes:

Genotypes:

FYPO:0001839 - normal minichromosome loss

Genes:

Genotypes:

FYPO:0006991 - normal spatial extent of heterochromatin assembly at protein coding gene

Genes:

Genotypes:

FYPO:0006986 - normal spatial extent of heterochromatin assembly to boundary element IRL

Genes:

Genotypes:

FYPO:0001125 - normal vegetative cell shape

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

Genes:

Genotypes:

FYPO:0000024 - stubby vegetative cell

Genes:

Genotypes: