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Reference - PMID:26744419 - Control of heterochromatin localization and silencing by the nuclear membrane protein Lem2.

Reference summary

PubMed ID
PMID:26744419
Title
Control of heterochromatin localization and silencing by the nuclear membrane protein Lem2.
Authors
Barrales RR, Forn M, Georgescu PR, Sarkadi Z, Braun S
Citation
Genes Dev 2016 Jan 15;30(2):133-48
Publication year
2016
Abstract
Transcriptionally silent chromatin localizes to the nuclear periphery, which provides a special microenvironment for gene repression. A variety of nuclear membrane proteins interact with repressed chromatin, yet the functional role of these interactions remains poorly understood. Here, we show that, in Schizosaccharomyces pombe, the nuclear membrane protein Lem2 associates with chromatin and mediates silencing and heterochromatin localization. Unexpectedly, we found that these functions can be separated and assigned to different structural domains within Lem2, excluding a simple tethering mechanism. Chromatin association and tethering of centromeres to the periphery are mediated by the N-terminal LEM (LAP2-Emerin-MAN1) domain of Lem2, whereas telomere anchoring and heterochromatin silencing require exclusively its conserved C-terminal MSC (MAN1-Src1 C-terminal) domain. Particularly, silencing by Lem2 is epistatic with the Snf2/HDAC (histone deacetylase) repressor complex SHREC at telomeres, while its necessity can be bypassed by deleting Epe1, a JmjC protein with anti-silencing activity. Furthermore, we found that loss of Lem2 reduces heterochromatin association of SHREC, which is accompanied by increased binding of Epe1. This reveals a critical function of Lem2 in coordinating these antagonistic factors at heterochromatin. The distinct silencing and localization functions mediated by Lem2 suggest that these conserved LEM-containing proteins go beyond simple tethering to play active roles in perinuclear silencing.

Annotation

GO biological process

GO:0140698 - attachment of telomeric heterochromatin to nuclear envelope

Genes:

GO:0072766 - centromere clustering at the mitotic interphase nuclear envelope

Genes:

GO:0140464 - subnuclear spatial organization of silent mating-type cassette heterochromatin

Genes:

GO cellular component

GO:0005635 - nuclear envelope

Genes:

GO:0034399 - nuclear periphery

Genes:

GO:0005721 - pericentric heterochromatin

Genes:

GO molecular function

GO:0140449 - centromere-nuclear envelope anchor activity

Genes:

GO:0003682 - chromatin binding

Genes:

GO:0062239 - heterochromatin-nuclear membrane anchor activity

Genes:

Multi-locus phenotype

FYPO:0006800 - decreased centromere clustering at nuclear periphery during mitotic interphase

Genes:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0002339 - decreased protein localization to nuclear periphery

Genes:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

Genes:

Genotypes:

FYPO:0005602 - normal subtelomeric heterochromatin RNA level

Genes:

Genotypes:

Single locus phenotype

FYPO:0004790 - abnormal telomere-nuclear envelope distance during vegetative growth

Genes:

Genotypes:

FYPO:0006106 - abolished chromatin binding at centromere central core

Genes:

Genotypes:

FYPO:0004886 - abolished protein localization to nuclear envelope during vegetative growth

Genes:

Genotypes:

FYPO:0006800 - decreased centromere clustering at nuclear periphery during mitotic interphase

Genes:

Genotypes:

FYPO:0002577 - decreased chromatin binding

Genes:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0002339 - decreased protein localization to nuclear periphery

Genes:

Genotypes:

FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

Genes:

Genotypes:

FYPO:0002387 - decreased protein localization to subtelomeric heterochromatin during vegetative growth

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0002980 - increased chromatin binding

Genes:

Genotypes:

FYPO:0004342 - increased LTR-derived RNA level

Genes:

Genotypes:

FYPO:0003009 - increased protein localization to centromere outer repeat

Genes:

Genotypes:

FYPO:0003010 - increased protein localization to subtelomeric heterochromatin during vegetative growth

Genes:

Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

Genes:

Genotypes:

FYPO:0003086 - normal chromatin binding

Genes:

Genotypes:

FYPO:0004879 - normal chromatin binding at centromere central core

Genes:

Genotypes:

FYPO:0002360 - normal chromatin silencing at centromere

Genes:

Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0003555 - normal chromatin silencing at subtelomere

Genes:

Genotypes:

FYPO:0006429 - normal histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

Genes:

Genotypes:

FYPO:0005612 - normal protein localization to nuclear envelope

Genes:

Genotypes:

FYPO:0005602 - normal subtelomeric heterochromatin RNA level

Genes:

Genotypes:

FYPO:0004924 - normal telomere tethering at nuclear periphery during vegetative growth

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes: