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Reference - PMID:26942678 - Enhancer of Rudimentary Cooperates with Conserved RNA-Processing Factors to Promote Meiotic mRNA Decay and Facultative Heterochromatin Assembly.

Reference summary

PubMed ID
PMID:26942678
Title
Enhancer of Rudimentary Cooperates with Conserved RNA-Processing Factors to Promote Meiotic mRNA Decay and Facultative Heterochromatin Assembly.
Authors
Sugiyama T, Thillainadesan G, Chalamcharla VR, Meng Z, Balachandran V, Dhakshnamoorthy J, Zhou M, Grewal SIS
Citation
Mol Cell 2016 Mar 03;61(5):747-759
Publication year
2016
Abstract
Erh1, the fission yeast homolog of Enhancer of rudimentary, is implicated in meiotic mRNA elimination during vegetative growth, but its function is poorly understood. We show that Erh1 and the RNA-binding protein Mmi1 form a stoichiometric complex, called the Erh1-Mmi1 complex (EMC), to promote meiotic mRNA decay and facultative heterochromatin assembly. To perform these functions, EMC associates with two distinct complexes, Mtl1-Red1 core (MTREC) and CCR4-NOT. Whereas MTREC facilitates assembly of heterochromatin islands coating meiotic genes silenced by the nuclear exosome, CCR4-NOT promotes RNAi-dependent heterochromatin domain (HOOD) formation at EMC-target loci. CCR4-NOT also assembles HOODs at retrotransposons and regulated genes containing cryptic introns. We find that CCR4-NOT facilitates HOOD assembly through its association with the conserved Pir2/ARS2 protein, and also maintains rDNA integrity and silencing by promoting heterochromatin formation. Our results reveal connections among Erh1, CCR4-NOT, Pir2/ARS2, and RNAi, which target heterochromatin to regulate gene expression and protect genome integrity.

Annotation

GO biological process

GO:0033621 - nuclear mRNA surveillance of meiosis-specific transcripts

Genes:

GO:1902801 - regulation of siRNA-independent facultative heterochromatin formation

Genes:

GO:1902794 - siRNA-independent facultative heterochromatin formation

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GO cellular component

GO:1905754 - ascospore-type prospore nucleus

Genes:

GO:1990342 - heterochromatin island

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GO:1990251 - nuclear exosome focus

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GO:0005634 - nucleus

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GO:0033553 - rDNA heterochromatin

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GO molecular function

GO:0005515 - protein binding

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Multi-locus phenotype

FYPO:0000080 - decreased cell population growth at low temperature

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Genotypes:

FYPO:0002141 - normal cell population growth at low temperature

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Single locus phenotype

FYPO:0005861 - abolished CCR4-NOT complex binding

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FYPO:0005862 - abolished MTREC complex binding

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FYPO:0005857 - altered antisense RNA level during vegetative growth

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FYPO:0005858 - altered level of translation gene mRNA during vegetative growth

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Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

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FYPO:0001407 - decreased cell population growth on glucose carbon source

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FYPO:0003216 - decreased chromatin silencing at rDNA

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FYPO:0000877 - decreased histone H3-K9 dimethylation at centromere during vegetative growth

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Genotypes:

FYPO:0000876 - decreased histone H3-K9 dimethylation during vegetative growth

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Genotypes:

FYPO:0003230 - decreased histone H3-K9 methylation at heterochromatin island during vegetative growth

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Genotypes:

FYPO:0003572 - decreased histone H3-K9 methylation at subtelomeric heterochromatin during vegetative growth

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Genotypes:

FYPO:0000872 - decreased histone H3-K9 methylation during vegetative growth

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Genotypes:

FYPO:0000708 - decreased mating efficiency

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Genotypes:

FYPO:0002960 - increased level of DSR-containing meiotic gene mRNA during vegetative growth

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Genotypes:

FYPO:0005868 - increased mitotic recombination at rDNA

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FYPO:0005917 - increased subtelomeric heterochromatin RNA level

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FYPO:0005863 - loss of punctate nuclear protein localization

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FYPO:0003056 - Mei2 nuclear dot absent from cell

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FYPO:0005860 - Mei2 nuclear dot present in cell during vegetative growth

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FYPO:0005859 - multiple Mei2 nuclear dots present in cell

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FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

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FYPO:0005866 - normal histone H3-K9 methylation at rDNA during vegetative growth

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FYPO:0005865 - normal histone H3-K9 methylation at silent mating-type cassette during vegetative growth

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FYPO:0005864 - normal histone H3-K9 methylation at subtelomeric heterochromatin during vegetative growth

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FYPO:0000833 - normal protein level during vegetative growth

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Genotypes:

FYPO:0004910 - normal punctate nuclear protein localization

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Genotypes: