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Reference - PMID:27151298 - Orderly progression through S-phase requires dynamic ubiquitylation and deubiquitylation of PCNA.

Reference summary

PubMed ID
PMID:27151298
Title
Orderly progression through S-phase requires dynamic ubiquitylation and deubiquitylation of PCNA.
Authors
Álvarez V, Viñas L, Gallego-Sánchez A, Andrés S, Sacristán MP, Bueno A
Citation
Sci Rep 2016 May 06;6:25513
Publication year
2016
Abstract
Proliferating-cell nuclear antigen (PCNA) is a DNA sliding clamp with an essential function in DNA replication and a key role in tolerance to DNA damage by ensuring the bypass of lesions. In eukaryotes, DNA damage tolerance is regulated by ubiquitylation of lysine 164 of PCNA through a well-known control mechanism; however, the regulation of PCNA deubiquitylation remains poorly understood. Our work is a systematic and functional study on PCNA deubiquitylating enzymes (DUBs) in Schizosaccharomyces pombe. Our study reveals that the deubiquitylation of PCNA in fission yeast cells is a complex process that requires several ubiquitin proteases dedicated to the deubiquitylation of a specific subnuclear fraction of mono- and di-ubiquitylated PCNA or a particular type of poly-ubiquitylated PCNA and that there is little redundancy among these enzymes. To understand how DUB activity regulates the oscillatory pattern of ubiquitylated PCNA in fission yeast, we assembled multiple DUB mutants and found that a quadruple mutation of ubp2(+), ubp12(+), ubp15(+), and ubp16(+) leads to the stable accumulation of mono-, di-, and poly-ubiquitylated forms of PCNA, increases S-phase duration, and sensitizes cells to DNA damage. Our data suggest that the dynamic ubiquitylation and deubiquitylation of PCNA occurs during S-phase to ensure processive DNA replication.

Annotation

GO biological process

GO:1990505 - mitotic DNA replication maintenance of fidelity

Genes:

GO:1904332 - negative regulation of error-prone translesion synthesis

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GO cellular component

GO:0005730 - nucleolus

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GO:0005634 - nucleus

Genes:

GO:0005730 - nucleolus

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GO molecular function

GO:0101005 - deubiquitinase activity

Genes:

GO:0061578 - K63-linked deubiquitinase activity

Genes:

GO:0061630 - ubiquitin protein ligase activity

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Modification

MOD:01148 - ubiquitinylated lysine

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Multi-locus phenotype

FYPO:0005323 - abnormal error-free translesion synthesis

Genes:

Genotypes:

FYPO:0005676 - abolished protein deubiquitination following cellular response to methyl methanesulfonate during vegetative growth

Genes:

Genotypes:

FYPO:0005679 - decreased protein deubiquitination following cellular response to hydroxyurea during vegetative growth

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0000614 - increased duration of mitotic S phase

Genes:

Genotypes:

FYPO:0004436 - increased error-prone translesion synthesis

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Genotypes:

FYPO:0002774 - increased level of ubiquitinated protein in cell during vegetative growth

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Genotypes:

FYPO:0001532 - normal duration of mitotic S phase

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Genotypes:

FYPO:0000963 - normal growth on hydroxyurea

Genes:

Genotypes:

FYPO:0005680 - normal number of Rad52 foci during mitotic S phase

Genes:

Genotypes:

FYPO:0001098 - sensitive to 4-nitroquinoline N-oxide

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Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

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Genotypes:

FYPO:0000268 - sensitive to UV during vegetative growth

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Genotypes:

FYPO:0005678 - ubiquitinated protein absent from cell during vegetative growth

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Genotypes:

FYPO:0002176 - viable vegetative cell with normal cell size

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Single locus phenotype

FYPO:0001424 - abolished protein localization to nucleus during vegetative growth

Genes:

Genotypes:

FYPO:0005226 - decreased level of ubiquitinated protein in cell

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Genotypes:

FYPO:0005673 - decreased level of ubiquitinated protein in cell during cellular response to methyl methanesulfonate

Genes:

Genotypes:

FYPO:0005677 - decreased number of Rad52 foci during mitotic S phase

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Genotypes:

FYPO:0005674 - increased level of ubiquitinated protein in cell during cellular response to methyl methanesulfonate

Genes:

Genotypes:

FYPO:0002774 - increased level of ubiquitinated protein in cell during vegetative growth

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Genotypes:

FYPO:0005296 - increased number of Rad52 foci during mitotic S phase

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Genotypes:

FYPO:0000969 - normal growth during cellular response to UV

Genes:

Genotypes:

FYPO:0001689 - normal growth on 4-nitroquinoline N-oxide

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Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

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Genotypes:

FYPO:0005227 - normal level of ubiquitinated protein in cell

Genes:

Genotypes:

FYPO:0005675 - normal protein deubiquitination following cellular response to methyl methanesulfonate during vegetative growth

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

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Genotypes:

FYPO:0005678 - ubiquitinated protein absent from cell during vegetative growth

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Genotypes:

FYPO:0001492 - viable elongated vegetative cell

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