PomBase home

Reference - PMID:27183195 - Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation.

Reference summary

PubMed ID
PMID:27183195
Title
Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation.
Authors
Valkov E, Muthukumar S, Chang CT, Jonas S, Weichenrieder O, Izaurralde E
Citation
Nat Struct Mol Biol 2016 Jun;23(6):574-9
Publication year
2016
Abstract
The removal of the mRNA 5' cap (decapping) by Dcp2 shuts down translation and commits mRNA to full degradation. Dcp2 activity is enhanced by activator proteins such as Dcp1 and Edc1. However, owing to conformational flexibility, the active conformation of Dcp2 and the mechanism of decapping activation have remained unknown. Here, we report a 1.6-Å-resolution crystal structure of the Schizosaccharomyces pombe Dcp2-Dcp1 heterodimer in an unprecedented conformation that is tied together by an intrinsically disordered peptide from Edc1. In this ternary complex, an unforeseen rotation of the Dcp2 catalytic domain allows residues from both Dcp2 and Dcp1 to cooperate in RNA binding, thus explaining decapping activation by increased substrate affinity. The architecture of the Dcp2-Dcp1-Edc1 complex provides a rationale for the conservation of a sequence motif in Edc1 that is also present in unrelated decapping activators, thus indicating that the presently described mechanism of decapping activation is evolutionarily conserved.

Annotation

GO cellular component

GO:0098745 - RNA decapping complex

Genes:

GO molecular function

GO:0140932 - 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase activity

Genes:

GO:0170008 - mRNA phosphatase activator activity

Genes:

GO:0005515 - protein binding

Genes:

GO:0003723 - RNA binding

Genes:

Single locus phenotype

FYPO:0003940 - abolished m7G(5')pppN diphosphatase activity

Genes:

Genotypes:

FYPO:0003941 - decreased m7G(5')pppN diphosphatase activity

Genes:

Genotypes: