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Reference - PMID:27227887 - The Loss of Lam2 and Npr2-Npr3 Diminishes the Vacuolar Localization of Gtr1-Gtr2 and Disinhibits TORC1 Activity in Fission Yeast.

Reference summary

PubMed ID
PMID:27227887
Title
The Loss of Lam2 and Npr2-Npr3 Diminishes the Vacuolar Localization of Gtr1-Gtr2 and Disinhibits TORC1 Activity in Fission Yeast.
Authors
Ma N, Ma Y, Nakashima A, Kikkawa U, Furuyashiki T
Citation
PLoS One 2016;11(5):e0156239
Publication year
2016
Abstract
In mammalian cells, mTORC1 activity is regulated by Rag GTPases. It is thought that the Ragulator complex and the GATOR (GAP activity towards Rags) complex regulate RagA/B as its GDP/GTP exchange factor (GEF) and GTPase-activating protein (GAP), respectively. However, the functions of components in these complexes remain elusive. Using fission yeast as a model organism, here we found that the loss of Lam2 (SPBC1778.05c), a homolog of a Ragulator component LAMTOR2, as well as the loss of Gtr1 or Gtr2 phenocopies the loss of Npr2 or Npr3, homologs of GATOR components Nprl2 or Nprl3, respectively. These phenotypes were rescued by TORC1 inhibition using pharmacological or genetic means, and the loss of Lam2, Gtr1, Gtr2, Npr2 or Npr3 disinhibited TORC1 activity under nitrogen depletion, as measured by Rps6 phosphorylation. Consistently, overexpression of GDP-locked Gtr1S20L or GTP-locked Gtr2Q60L, which suppress TORC1 activity in budding yeast, rescued the growth defect of Δgtr1 cells or Δgtr2 cells, respectively, and the loss of Lam2, Npr2 or Npr3 similarly diminished the vacuolar localization and the protein levels of Gtr1 and Gtr2. Furthermore, Lam2 physically interacted with Npr2 and Gtr1. These findings suggest that Lam2 and Npr2-Npr3 function together as a tether for GDP-bound Gtr1 to the vacuolar membrane, thereby suppressing TORC1 activity for multiple cellular functions.

Annotation

GO biological process

GO:1904262 - negative regulation of TORC1 signaling

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GO cellular component

GO:0005829 - cytosol

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GO:0000329 - fungal-type vacuole membrane

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GO:1990130 - GATOR1 complex

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GO:1990131 - Gtr1-Gtr2 GTPase complex

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GO:0005634 - nucleus

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GO:0071986 - Ragulator complex

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GO molecular function

GO:0043495 - protein-membrane adaptor activity

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Multi-locus phenotype

FYPO:0001164 - normal growth on glucose carbon source

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Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

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Single locus phenotype

FYPO:0002128 - abolished protein localization to plasma membrane, with protein mislocalized to cytoplasm, during vegetative growth

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Genotypes:

FYPO:0001575 - abolished vegetative cell population growth

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FYPO:0000046 - decreased cell population growth

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FYPO:0004457 - decreased protein localization to nucleus during nitrogen starvation

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FYPO:0006233 - decreased protein localization to vacuolar membrane

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FYPO:0001117 - decreased RNA level during vegetative growth

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Genotypes:

FYPO:0005118 - decreased transcription during nitrogen starvation

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FYPO:0000781 - decreased transcription during vegetative growth

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FYPO:0002681 - increased protein phosphorylation during nitrogen starvation

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FYPO:0000825 - increased RNA level during vegetative growth

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FYPO:0001029 - resistance to canavanine

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FYPO:0000281 - small vacuoles present in increased numbers during vegetative growth

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FYPO:0002060 - viable vegetative cell population

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