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Reference - PMID:27334362 - Inner nuclear membrane protein Lem2 augments heterochromatin formation in response to nutritional conditions.

Reference summary

PubMed ID
PMID:27334362
Title
Inner nuclear membrane protein Lem2 augments heterochromatin formation in response to nutritional conditions.
Authors
Tange Y, Chikashige Y, Takahata S, Kawakami K, Higashi M, Mori C, Kojidani T, Hirano Y, Asakawa H, Murakami Y, Haraguchi T, Hiraoka Y
Citation
Genes Cells 2016 Aug;21(8):812-32
Publication year
2016
Abstract
Inner nuclear membrane proteins interact with chromosomes in the nucleus and are important for chromosome activity. Lem2 and Man1 are conserved members of the LEM-domain nuclear membrane protein family. Mutations of LEM-domain proteins are associated with laminopathy, but their cellular functions remain unclear. Here, we report that Lem2 maintains genome stability in the fission yeast Schizosaccharomyces pombe. S. pombe cells disrupted for the lem2(+) gene (lem2∆) showed slow growth and increased rate of the minichromosome loss. These phenotypes were prominent in the rich culture medium, but not in the minimum medium. Centromeric heterochromatin formation was augmented upon transfer to the rich medium in wild-type cells. This augmentation of heterochromatin formation was impaired in lem2∆ cells. Notably, lem2∆ cells occasionally exhibited spontaneous duplication of genome sequences flanked by the long-terminal repeats of retrotransposons. The resulting duplication of the lnp1(+) gene, which encodes an endoplasmic reticulum membrane protein, suppressed lem2∆ phenotypes, whereas the lem2∆ lnp1∆ double mutant showed a severe growth defect. A combination of mutations in Lem2 and Bqt4, which encodes a nuclear membrane protein that anchors telomeres to the nuclear membrane, caused synthetic lethality. These genetic interactions imply that Lem2 cooperates with the nuclear membrane protein network to regulate genome stability.

Annotation

GO cellular component

GO:0061638 - CENP-A containing chromatin

Genes:

GO:0005783 - endoplasmic reticulum

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GO:0005635 - nuclear envelope

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GO:0005637 - nuclear inner membrane

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Multi-locus phenotype

FYPO:0005554 - abolished histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0005371 - increased linear minichromosome loss during vegetative growth

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Genotypes:

FYPO:0002430 - inviable after spore germination, multiple cell divisions

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FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0001839 - normal minichromosome loss

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Genotypes:

FYPO:0001357 - normal vegetative cell population growth

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FYPO:0002060 - viable vegetative cell population

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Single locus phenotype

FYPO:0005554 - abolished histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0004745 - abolished histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000878 - decreased histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0005371 - increased linear minichromosome loss during vegetative growth

Genes:

Genotypes:

FYPO:0001839 - normal minichromosome loss

Genes:

Genotypes:

FYPO:0004314 - normal protein localization to CENP-A containing chromatin

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Genotypes:

FYPO:0001357 - normal vegetative cell population growth

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FYPO:0001234 - slow vegetative cell population growth

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