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Reference - PMID:27451393 - Role of Inner Nuclear Membrane Protein Complex Lem2-Nur1 in Heterochromatic Gene Silencing.

Reference summary

PubMed ID
PMID:27451393
Title
Role of Inner Nuclear Membrane Protein Complex Lem2-Nur1 in Heterochromatic Gene Silencing.
Authors
Banday S, Farooq Z, Rashid R, Abdullah E, Altaf M
Citation
J Biol Chem 2016 Sep 16;291(38):20021-9
Publication year
2016
Abstract
Heterochromatin in the fission yeast Schizosaccharomyces pombe is clustered at the nuclear periphery and interacts with a number of nuclear membrane proteins. However, the significance and the factors that sequester heterochromatin at the nuclear periphery are not fully known. Here, we report that an inner nuclear membrane protein complex Lem2-Nur1 is essential for heterochromatin-mediated gene silencing. We found that Lem2 is physically associated with another inner nuclear membrane protein, Nur1, and deletion of either lem2 or nur1 causes silencing defect at centromeres, telomeres, and rDNA loci. We analyzed the genome-wide association of Lem2 using ChIP sequencing and we found that it binds to the central core region of centromeres, in striking contrast to Chp1, a component of pericentromeric heterochromatin, which binds H3K9me-rich chromatin in neighboring sequences. The recruitment of Lem2 and Nur1 to silent regions of the genome is dependent on H3K9 methyltransferase, Clr4. Finally, we show that the Lem2-Nur1 complex regulates the local balance between the underln]Snf2/HDAC-containing repressor complex (SHREC) histone deacetylase complex and the anti-silencing protein Epe1. These findings uncover a novel role for Lem2-Nur1 as a key functional link between localization at the nuclear periphery and heterochromatin-mediated gene silencing.

Annotation

GO biological process

GO:0070828 - heterochromatin organization

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GO cellular component

GO:0061638 - CENP-A containing chromatin

Genes:

GO:0034506 - chromosome, centromeric core domain

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GO:0099115 - chromosome, subtelomeric region

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GO:0033553 - rDNA heterochromatin

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GO molecular function

GO:0005515 - protein binding

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Single locus phenotype

FYPO:0004312 - abolished protein localization to CENP-A containing chromatin

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Genotypes:

FYPO:0003109 - abolished protein localization to telomere during vegetative growth

Genes:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

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Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

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Genotypes:

FYPO:0000877 - decreased histone H3-K9 dimethylation at centromere during vegetative growth

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Genotypes:

FYPO:0002391 - decreased protein localization to chromatin at rDNA

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Genotypes:

FYPO:0002909 - decreased protein localization to chromatin during vegetative growth

Genes:

Genotypes:

FYPO:0003011 - increased protein localization to chromatin during vegetative growth

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Genotypes:

FYPO:0000091 - sensitive to thiabendazole

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Genotypes: