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Reference - PMID:27538348 - Set3 contributes to heterochromatin integrity by promoting transcription of subunits of Clr4-Rik1-Cul4 histone methyltransferase complex in fission yeast.

Reference summary

PubMed ID
PMID:27538348
Title
Set3 contributes to heterochromatin integrity by promoting transcription of subunits of Clr4-Rik1-Cul4 histone methyltransferase complex in fission yeast.
Authors
Yu Y, Zhou H, Deng X, Wang W, Lu H
Citation
Sci Rep 2016 Aug 19;6:31752
Publication year
2016
Abstract
Heterochromatin formation in fission yeast depends on RNAi machinery and histone-modifying enzymes. One of the key histone-modifying complexes is Clr4-Rik1-Cul4 methyltransferase complex (CLRC), which mediates histone H3K9 methylation, a hallmark for heterochromatin. CLRC is composed of the Clr4 histone methyltransferase, Rik1, Raf1, Raf2 and Pcu4. However, transcriptional regulation of the CLRC subunits is not well understood. In this study, we identified Set3, a core subunit of the Set3/Hos2 histone deacetylase complex (Set3C), as a contributor to the integrity and silencing of heterochromatin at centromeres, telomeres and silent mating-type locus. This novel role of Set3 relies on its PHD finger, but is independent of deacetylase activity or structural integrity of Set3C. Set3 is not located to the centromeric region. Instead, Set3 is targeted to the promoters of clr4(+) and rik1(+), probably through its PHD finger. Set3 promotes transcription of clr4(+) and rik1(+). Consistently, the protein levels of Clr4 and Rik1 were reduced in the set3Δ mutant. The heterochromatin silencing defect in the set3Δ mutant could be rescued by overexpressing of clr4(+) or rik1(+). Our study suggests transcriptional activation of essential heterochromatin factors underlies the tight regulation of heterochromatin integrity.

Annotation

GO cellular component

GO:0000792 - heterochromatin

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GO:0000792 - heterochromatin

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GO:0005721 - pericentric heterochromatin

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GO molecular function

GO:1990841 - promoter-specific chromatin binding

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Multi-locus phenotype

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0004742 - normal chromatin silencing at centromere outer repeat

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FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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Single locus phenotype

FYPO:0006112 - abolished histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

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FYPO:0006111 - abolished histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

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FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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FYPO:0004604 - decreased chromatin silencing at subtelomere

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FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

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FYPO:0004137 - decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

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FYPO:0001324 - decreased protein level during vegetative growth

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FYPO:0007505 - decreased protein localization to chromatin at promoter

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FYPO:0001117 - decreased RNA level during vegetative growth

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FYPO:0000825 - increased RNA level during vegetative growth

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FYPO:0004742 - normal chromatin silencing at centromere outer repeat

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FYPO:0000833 - normal protein level during vegetative growth

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FYPO:0008245 - normal protein localization to chromatin at gene promoter region

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FYPO:0001317 - normal RNA level during vegetative growth

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