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Reference - PMID:27648579 - A histone H3K9M mutation traps histone methyltransferase Clr4 to prevent heterochromatin spreading.

Reference summary

PubMed ID
PMID:27648579
Title
A histone H3K9M mutation traps histone methyltransferase Clr4 to prevent heterochromatin spreading.
Authors
Shan CM, Wang J, Xu K, Chen H, Yue JX, Andrews S, Moresco JJ, Yates JR, Nagy PL, Tong L, Jia S
Citation
Elife 2016 Sep 20;5
Publication year
2016
Abstract
Histone lysine-to-methionine (K-to-M) mutations are associated with multiple cancers, and they function in a dominant fashion to block the methylation of corresponding lysines on wild type histones. However, their mechanisms of function are controversial. Here we show that in fission yeast, introducing the K9M mutation into one of the three histone H3 genes dominantly blocks H3K9 methylation on wild type H3 across the genome. In addition, H3K9M enhances the interaction of histone H3 tail with the H3K9 methyltransferase Clr4 in a SAM (S-adenosyl-methionine)-dependent manner, and Clr4 is trapped at nucleation sites to prevent its spreading and the formation of large heterochromatin domains. We further determined the crystal structure of an H3K9M peptide in complex with human H3K9 methyltransferase G9a and SAM, which reveales that the methionine side chain had enhanced van der Waals interactions with G9a. Therefore, our results provide a detailed mechanism by which H3K9M regulates H3K9 methylation.

Annotation

GO biological process

GO:0033696 - heterochromatin boundary formation

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Multi-locus phenotype

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

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Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

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Genotypes:

FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0004377 - increased protein localization to heterochromatin at silent mating-type cassette

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Genotypes:

FYPO:0002567 - normal centromeric outer repeat transcript level

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Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

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Single locus phenotype

FYPO:0003098 - abnormal heterochromatin assembly at centromere outer repeat during vegetative growth

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FYPO:0000468 - abnormal mating type switching

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Genotypes:

FYPO:0004745 - abolished histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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Genotypes:

FYPO:0005843 - abolished histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

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Genotypes:

FYPO:0005844 - abolished histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

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FYPO:0005848 - abolished histone methyltransferase activity (H3-K9 specific) activity

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Genotypes:

FYPO:0005850 - abolished protein localization to heterochromatin at centromere outer repeat

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FYPO:0000705 - abolished protein-protein interaction

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0005845 - decreased histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0005847 - decreased histone methyltransferase activity (H3-K9 specific) activity

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Genotypes:

FYPO:0003573 - decreased protein localization to heterochromatin at silent mating-type cassette

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FYPO:0005849 - decreased spatial extent of heterochromatin assembly

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Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

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FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

Genes:

Genotypes:

FYPO:0004377 - increased protein localization to heterochromatin at silent mating-type cassette

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FYPO:0001571 - increased protein-protein interaction

Genes:

Genotypes:

FYPO:0002567 - normal centromeric outer repeat transcript level

Genes:

Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

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Genotypes:

FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

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FYPO:0002358 - normal histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

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FYPO:0000833 - normal protein level during vegetative growth

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FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

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Genotypes:

FYPO:0000703 - normal protein-protein interaction

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Genotypes: