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Reference - PMID:28366642 - Spt5 Plays Vital Roles in the Control of Sense and Antisense Transcription Elongation.

Reference summary

PubMed ID
PMID:28366642
Title
Spt5 Plays Vital Roles in the Control of Sense and Antisense Transcription Elongation.
Authors
Shetty A, Kallgren SP, Demel C, Maier KC, Spatt D, Alver BH, Cramer P, Park PJ, Winston F
Citation
Mol Cell 2017 Apr 06;66(1):77-88.e5
Publication year
2017
Abstract
Spt5 is an essential and conserved factor that functions in transcription and co-transcriptional processes. However, many aspects of the requirement for Spt5 in transcription are poorly understood. We have analyzed the consequences of Spt5 depletion in Schizosaccharomyces pombe using four genome-wide approaches. Our results demonstrate that Spt5 is crucial for a normal rate of RNA synthesis and distribution of RNAPII over transcription units. In the absence of Spt5, RNAPII localization changes dramatically, with reduced levels and a relative accumulation over the first ∼500 bp, suggesting that Spt5 is required for transcription past a barrier. Spt5 depletion also results in widespread antisense transcription initiating within this barrier region. Deletions of this region alter the distribution of RNAPII on the sense strand, suggesting that the barrier observed after Spt5 depletion is normally a site at which Spt5 stimulates elongation. Our results reveal a global requirement for Spt5 in transcription elongation.

Annotation

GO biological process

GO:0006368 - transcription elongation by RNA polymerase II

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GO molecular function

GO:0003711 - transcription elongation factor activity

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Single locus phenotype

FYPO:0000189 - abnormal mRNA splicing, via spliceosome

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FYPO:0006020 - abnormal protein distribution along RNA polymerase II-transcribed genes

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FYPO:0004126 - abolished histone H3-K4 trimethylation during vegetative growth

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FYPO:0002368 - decreased histone H3-K4 trimethylation during vegetative growth

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FYPO:0004067 - decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during vegetative growth

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FYPO:0004161 - decreased protein localization to chromatin at RNA polymerase II-transcribed genes during vegetative growth

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FYPO:0001117 - decreased RNA level during vegetative growth

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FYPO:0005229 - decreased transcription from RNA polymerase II promoter during vegetative growth

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FYPO:0002913 - increased antisense RNA transcription

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FYPO:0005061 - normal phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during vegetative growth

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FYPO:0006021 - normal protein distribution along RNA polymerase II-transcribed genes

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