PomBase home

Reference - PMID:28367989 - The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA.

Reference summary

PubMed ID
PMID:28367989
Title
The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA.
Authors
Wittmann S, Renner M, Watts BR, Adams O, Huseyin M, Baejen C, El Omari K, Kilchert C, Heo DH, Kecman T, Cramer P, Grimes JM, Vasiljeva L
Citation
Nat Commun 2017 Apr 03;8:14861
Publication year
2017
Abstract
Termination of RNA polymerase II (Pol II) transcription is an important step in the transcription cycle, which involves the dislodgement of polymerase from DNA, leading to release of a functional transcript. Recent studies have identified the key players required for this process and showed that a common feature of these proteins is a conserved domain that interacts with the phosphorylated C-terminus of Pol II (CTD-interacting domain, CID). However, the mechanism by which transcription termination is achieved is not understood. Using genome-wide methods, here we show that the fission yeast CID-protein Seb1 is essential for termination of protein-coding and non-coding genes through interaction with S2-phosphorylated Pol II and nascent RNA. Furthermore, we present the crystal structures of the Seb1 CTD- and RNA-binding modules. Unexpectedly, the latter reveals an intertwined two-domain arrangement of a canonical RRM and second domain. These results provide important insights into the mechanism underlying eukaryotic transcription termination.

Annotation

GO biological process

GO:0006369 - termination of RNA polymerase II transcription

Genes:

GO cellular component

GO:0005634 - nucleus

Genes:

GO molecular function

GO:0140463 - chromatin-protein adaptor activity

Genes:

GO:0005515 - protein binding

Genes:

GO:0003723 - RNA binding

Genes:

GO:0099122 - RNA polymerase II C-terminal domain binding

Genes:

Multi-locus phenotype

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

Single locus phenotype

FYPO:0002133 - abolished protein-RNA interaction

Genes:

Genotypes:

FYPO:0002577 - decreased chromatin binding

Genes:

Genotypes:

FYPO:0001645 - decreased protein-protein interaction

Genes:

Genotypes:

FYPO:0002134 - decreased protein-RNA interaction

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0003049 - increased transcriptional readthrough

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

FYPO:0002060 - viable vegetative cell population

Genes:

Genotypes: