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Reference - PMID:28541282 - Tailing and degradation of Argonaute-bound small RNAs protect the genome from uncontrolled RNAi.

Reference summary

PubMed ID
PMID:28541282
Title
Tailing and degradation of Argonaute-bound small RNAs protect the genome from uncontrolled RNAi.
Authors
Pisacane P, Halic M
Citation
Nat Commun 2017 May 25;8:15332
Publication year
2017
Abstract
RNAi is a conserved mechanism in which small RNAs induce silencing of complementary targets. How Argonaute-bound small RNAs are targeted for degradation is not well understood. We show that the adenyl-transferase Cid14, a member of the TRAMP complex, and the uridyl-transferase Cid16 add non-templated nucleotides to Argonaute-bound small RNAs in fission yeast. The tailing of Argonaute-bound small RNAs recruits the 3'-5' exonuclease Rrp6 to degrade small RNAs. Failure in degradation of Argonaute-bound small RNAs results in accumulation of 'noise' small RNAs on Argonaute and targeting of diverse euchromatic genes by RNAi. To protect themselves from uncontrolled RNAi, cid14Δ cells exploit the RNAi machinery and silence genes essential for RNAi itself, which is required for their viability. Our data indicate that surveillance of Argonaute-bound small RNAs by Cid14/Cid16 and the exosome protects the genome from uncontrolled RNAi and reveal a rapid RNAi-based adaptation to stress conditions.

Annotation

GO biological process

GO:1990431 - priRNA 3'-end processing

Genes:

GO:0140746 - siRNA catabolic process

Genes:

GO molecular function

GO:0000175 - 3'-5'-RNA exonuclease activity

Genes:

GO:1990817 - poly(A) RNA polymerase activity

Genes:

GO:0050265 - RNA uridylyltransferase activity

Genes:

GO:0035197 - siRNA binding

Genes:

Multi-locus phenotype

FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0001137 - decreased mature 25S rRNA level

Genes:

Genotypes:

FYPO:0006073 - decreased small RNA degradation

Genes:

Genotypes:

FYPO:0006079 - increased chromatin silencing at rDNA

Genes:

Genotypes:

FYPO:0006077 - increased histone H3-K9 methylation at rDNA during vegetative growth

Genes:

Genotypes:

FYPO:0006078 - increased ribosomal RNA-derived siRNA level

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

Single locus phenotype

FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0006073 - decreased small RNA degradation

Genes:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

Genes:

Genotypes:

FYPO:0006074 - increased histone H3-K9 dimethylation at rDNA during vegetative growth

Genes:

Genotypes:

FYPO:0006075 - increased mature 25S rRNA level

Genes:

Genotypes:

FYPO:0004207 - increased siRNA level

Genes:

Genotypes:

FYPO:0006070 - increased small RNA 3' adenylation

Genes:

Genotypes:

FYPO:0006069 - increased small RNA binding

Genes:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

Genes:

Genotypes:

FYPO:0006076 - siRNA absent from cell

Genes:

Genotypes: