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Reference - PMID:29618061 - Histone deacetylation promotes transcriptional silencing at facultative heterochromatin.

Reference summary

PubMed ID
PMID:29618061
Title
Histone deacetylation promotes transcriptional silencing at facultative heterochromatin.
Authors
Watts BR, Wittmann S, Wery M, Gautier C, Kus K, Birot A, Heo DH, Kilchert C, Morillon A, Vasiljeva L
Citation
Nucleic Acids Res 2018 Jun 20;46(11):5426-5440
Publication year
2018
Abstract
It is important to accurately regulate the expression of genes involved in development and environmental response. In the fission yeast Schizosaccharomyces pombe, meiotic genes are tightly repressed during vegetative growth. Despite being embedded in heterochromatin these genes are transcribed and believed to be repressed primarily at the level of RNA. However, the mechanism of facultative heterochromatin formation and the interplay with transcription regulation is not understood. We show genome-wide that HDAC-dependent histone deacetylation is a major determinant in transcriptional silencing of facultative heterochromatin domains. Indeed, mutation of class I/II HDACs leads to increased transcription of meiotic genes and accumulation of their mRNAs. Mechanistic dissection of the pho1 gene where, in response to phosphate, transient facultative heterochromatin is established by overlapping lncRNA transcription shows that the Clr3 HDAC contributes to silencing independently of SHREC, but in an lncRNA-dependent manner. We propose that HDACs promote facultative heterochromatin by establishing alternative transcriptional silencing.

Annotation

GO biological process

GO:1902794 - siRNA-independent facultative heterochromatin formation

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GO cellular component

GO:0000791 - euchromatin

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Multi-locus phenotype

FYPO:0004346 - decreased protein localization to chromatin at ncRNA genes

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FYPO:0001890 - increased RNA level

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FYPO:0000825 - increased RNA level during vegetative growth

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FYPO:0001317 - normal RNA level during vegetative growth

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Single locus phenotype

FYPO:0004346 - decreased protein localization to chromatin at ncRNA genes

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FYPO:0007505 - decreased protein localization to chromatin at promoter

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FYPO:0005518 - increased histone H3-K14 acetylation at protein coding gene during vegetative growth

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FYPO:0002173 - increased level of meiotic gene mRNA during vegetative growth

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FYPO:0007279 - increased protein localization to euchromatin

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FYPO:0001890 - increased RNA level

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FYPO:0000825 - increased RNA level during vegetative growth

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FYPO:0007281 - normal level of meiotic gene mRNA during vegetative growth

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FYPO:0001317 - normal RNA level during vegetative growth

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