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Reference - PMID:29622660 - RNase H eliminates R-loops that disrupt DNA replication but is nonessential for efficient DSB repair.

Reference summary

PubMed ID
PMID:29622660
Title
RNase H eliminates R-loops that disrupt DNA replication but is nonessential for efficient DSB repair.
Authors
Zhao H, Zhu M, Limbo O, Russell P
Citation
EMBO Rep 2018 May;19(5)
Publication year
2018
Abstract
In Saccharomyces cerevisiae , genome stability depends on RNases H1 and H2, which remove ribonucleotides from DNA and eliminate RNA-DNA hybrids (R-loops). In Schizosaccharomyces pombe , RNase H enzymes were reported to process RNA-DNA hybrids produced at a double-strand break (DSB) generated by I-PpoI meganuclease. However, it is unclear if RNase H is generally required for efficient DSB repair in fission yeast, or whether it has other genome protection roles. Here, we show that S. pombe rnh1∆ rnh201∆ cells, which lack the RNase H enzymes, accumulate R-loops and activate DNA damage checkpoints. Their viability requires critical DSB repair proteins and Mus81, which resolves DNA junctions formed during repair of broken replication forks. "Dirty" DSBs generated by ionizing radiation, as well as a "clean" DSB at a broken replication fork, are efficiently repaired in the absence of RNase H. RNA-DNA hybrids are not detected at a reparable DSB formed by fork collapse. We conclude that unprocessed R-loops collapse replication forks in rnh1∆ rnh201∆ cells, but RNase H is not generally required for efficient DSB repair.

Annotation

GO biological process

GO:1990516 - ribonucleotide excision repair

Genes:

GO:0006401 - RNA catabolic process

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GO molecular function

GO:0004523 - RNA-DNA hybrid ribonuclease activity

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Multi-locus phenotype

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0004822 - increased number of R-loops at rDNA

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FYPO:0006495 - increased number of R-loops at tRNA genes

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FYPO:0000972 - increased number of Rad52 foci during vegetative growth

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FYPO:0001038 - increased protein phosphorylation during vegetative growth

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FYPO:0002059 - inviable cell population

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FYPO:0005398 - normal frequency of double-strand break repair via homologous recombination

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FYPO:0004229 - normal growth during cellular response to ionizing radiation

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Genotypes:

FYPO:0000472 - normal mating type switching

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Genotypes:

FYPO:0000085 - sensitive to camptothecin

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FYPO:0000088 - sensitive to hydroxyurea

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FYPO:0003481 - viable elongated vegetative cell, elongated upon mitotic entry

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Single locus phenotype

FYPO:0001038 - increased protein phosphorylation during vegetative growth

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FYPO:0001690 - normal growth on camptothecin

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FYPO:0000963 - normal growth on hydroxyurea

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Genotypes:

FYPO:0005680 - normal number of Rad52 foci during mitotic S phase

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Genotypes:

FYPO:0000085 - sensitive to camptothecin

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Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000267 - sensitive to ionizing radiation during vegetative growth

Genes:

Genotypes:

FYPO:0003481 - viable elongated vegetative cell, elongated upon mitotic entry

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Genotypes: