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Reference - PMID:29844133 - Loss of Elongation-Like Factor 1 Spontaneously Induces Diverse, RNase H-Related Suppressor Mutations in Schizosaccharomyces pombe .

Reference summary

PubMed ID
PMID:29844133
Title
Loss of Elongation-Like Factor 1 Spontaneously Induces Diverse, RNase H-Related Suppressor Mutations in Schizosaccharomyces pombe .
Authors
Marayati BF, Drayton AL, Tucker JF, Huckabee RH, Anderson AM, Pease JB, Zeyl CW, Zhang K
Citation
Genetics 2018 Aug;209(4):967-981
Publication year
2018
Abstract
A healthy individual may carry a detrimental genetic trait that is masked by another genetic mutation. Such suppressive genetic interactions, in which a mutant allele either partially or completely restores the fitness defect of a particular mutant, tend to occur between genes that have a confined functional connection. Here we investigate a self-recovery phenotype in Schizosaccharomyces pombe , mediated by suppressive genetic interactions that can be amplified during cell culture. Cells without Elf1, an AAA+ family ATPase, have severe growth defects initially, but quickly recover growth rates near to those of wild-type strains by acquiring suppressor mutations. elf1Δ cells accumulate RNAs within the nucleus and display effects of genome instability such as sensitivity to DNA damage, increased incidence of lagging chromosomes, and mini-chromosome loss. Notably, the rate of phenotypic recovery was further enhanced in elf1Δ cells when RNase H activities were abolished and significantly reduced upon overexpression of RNase H1, suggesting that loss of Elf1-related genome instability can be resolved by RNase H activities, likely through eliminating the potentially mutagenic DNA-RNA hybrids caused by RNA nuclear accumulation. Using whole genome sequencing, we mapped a few consistent suppressors of elf1Δ including mutated Cue2, Rpl2702, and SPBPJ4664.02, suggesting previously unknown functional connections between Elf1 and these proteins. Our findings describe a mechanism by which cells bearing mutations that cause fitness defects and genome instability may accelerate the fitness recovery of their population through quickly acquiring suppressors. We propose that this mechanism may be universally applicable to all microorganisms in large-population cultures.

Annotation

Multi-locus phenotype

FYPO:0000256 - mutator

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FYPO:0000969 - normal growth during cellular response to UV

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FYPO:0003906 - normal growth on bleomycin

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FYPO:0001164 - normal growth on glucose carbon source

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FYPO:0001839 - normal minichromosome loss

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FYPO:0001513 - normal mitotic sister chromatid segregation

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FYPO:0006619 - normal nuclear polyadenylated mRNA level during vegetative growth

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FYPO:0005437 - normal number of Rad52 foci during cellular response to bleomycin

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Single locus phenotype

FYPO:0001407 - decreased cell population growth on glucose carbon source

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FYPO:0001840 - increased minichromosome loss during vegetative growth

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FYPO:0003119 - increased nuclear polyadenylated mRNA level during vegetative growth

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FYPO:0006618 - increased number of Rad52 foci during cellular response to bleomycin

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FYPO:0000228 - lagging mitotic chromosomes

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FYPO:0000256 - mutator

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FYPO:0001164 - normal growth on glucose carbon source

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FYPO:0000095 - sensitive to bleomycin

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FYPO:0000268 - sensitive to UV during vegetative growth

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FYPO:0001492 - viable elongated vegetative cell

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