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Reference - PMID:30053106 - The Pif1 signature motif of Pfh1 is necessary for both protein displacement and helicase unwinding activities, but is dispensable for strand-annealing activity.

Reference summary

PubMed ID
PMID:30053106
Title
The Pif1 signature motif of Pfh1 is necessary for both protein displacement and helicase unwinding activities, but is dispensable for strand-annealing activity.
Authors
Mohammad JB, Wallgren M, Sabouri N
Citation
Nucleic Acids Res 2018 Sep 19;46(16):8516-8531
Publication year
2018
Abstract
Pfh1, the sole member of the Pif1 helicases in Schizosaccharomyces pombe, is multifunctional and essential for maintenance of both the nuclear and mitochondrial genomes. However, we lack mechanistic insights into the functions of Pfh1 and its different motifs. This paper is specifically concerned with the importance of the Pif1 signature motif (SM), a 23 amino acids motif unique to Pif1 helicases, because a single amino acid substitution in this motif is associated with increased risk of breast cancer in humans and inviability in S. pombe. Here we show that the nuclear isoform of Pfh1 (nPfh1) unwound RNA/DNA hybrids more efficiently than DNA/DNA, suggesting that Pfh1 resolves RNA/DNA structures like R-loops in vivo. In addition, nPfh1 displaced proteins from DNA and possessed strand-annealing activity. The unwinding and protein displacement activities were dependent on the SM because nPfh1 without a large portion of this motif (nPfh1-Δ21) or with the disease/inviability-linked mutation (nPfh1-L430P) lost these properties. Unexpectedly, both nPfh1-L430P and nPfh1-Δ21 still displayed binding to G-quadruplex DNA and demonstrated strand-annealing activity. Misregulated strand annealing and binding of nPfh1-L430P without unwinding are perhaps the reasons that cells expressing this allele are inviable.

Annotation

GO molecular function

GO:0033678 - 5'-3' DNA/RNA helicase activity

Genes:

GO:0061995 - ATP-dependent protein-DNA complex displacement activity

Genes:

GO:1990814 - DNA/DNA annealing activity

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GO:0070336 - flap-structured DNA binding

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GO:0051880 - G-quadruplex DNA binding

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GO:0160225 - G-quadruplex unwinding activity

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GO:0003723 - RNA binding

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Single locus phenotype

FYPO:0006649 - abolished 5'-3' DNA/RNA helicase activity

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Genotypes:

FYPO:0006651 - abolished ATP-dependent protein-DNA complex displacement activity

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Genotypes:

FYPO:0003674 - abolished ATPase activity

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Genotypes:

FYPO:0006655 - abolished G-quadruplex DNA unwinding

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Genotypes:

FYPO:0006648 - decreased 5'-3' DNA/RNA helicase activity

Genes:

Genotypes:

FYPO:0005439 - decreased DNA/DNA annealing activity

Genes:

Genotypes:

FYPO:0006656 - decreased G-quadruplex DNA unwinding

Genes:

Genotypes:

FYPO:0006652 - increased DNA/DNA annealing activity

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Genotypes:

FYPO:0004300 - normal ATPase activity

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Genotypes:

FYPO:0004787 - normal DNA/DNA annealing activity

Genes:

Genotypes:

FYPO:0006653 - normal flap-structured DNA binding

Genes:

Genotypes:

FYPO:0006654 - normal G-quadruplex DNA binding

Genes:

Genotypes: