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Reference - PMID:30451685 - Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein.

Reference summary

PubMed ID
PMID:30451685
Title
Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein.
Authors
Liu XM, Yamasaki A, Du XM, Coffman VC, Ohsumi Y, Nakatogawa H, Wu JQ, Noda NN, Du LL
Citation
Elife 2018 Nov 19;7
Publication year
2018
Abstract
The ubiquitin-like protein Atg8, in its lipidated form, plays central roles in autophagy. Yet, remarkably, Atg8 also carries out lipidation-independent functions in non-autophagic processes. How Atg8 performs its moonlighting roles is unclear. Here we report that in the fission yeast Schizosaccharomyces pombe and the budding yeast Saccharomyces cerevisiae , the lipidation-independent roles of Atg8 in maintaining normal morphology and functions of the vacuole require its interaction with a vacuole membrane protein Hfl1 (homolog of human TMEM184 proteins). Crystal structures revealed that the Atg8-Hfl1 interaction is not mediated by the typical Atg8-family-interacting motif (AIM) that forms an intermolecular β-sheet with Atg8. Instead, the Atg8-binding regions in Hfl1 proteins adopt a helical conformation, thus representing a new type of AIMs (termed helical AIMs here). These results deepen our understanding of both the functional versatility of Atg8 and the mechanistic diversity of Atg8 binding.

Annotation

GO biological process

GO:0007033 - vacuole organization

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GO cellular component

GO:0005829 - cytosol

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GO:0000329 - fungal-type vacuole membrane

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GO:0005774 - vacuolar membrane

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GO molecular function

GO:0005515 - protein binding

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Multi-locus phenotype

FYPO:0001245 - sensitive to cobalt

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FYPO:0006579 - sensitive to manganese

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FYPO:0000116 - sensitive to zinc

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Single locus phenotype

FYPO:0004250 - abolished protein localization to vacuolar membrane

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FYPO:0000705 - abolished protein-protein interaction

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FYPO:0006233 - decreased protein localization to vacuolar membrane

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FYPO:0001645 - decreased protein-protein interaction

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FYPO:0006785 - normal growth on cobalt

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FYPO:0006786 - normal growth on manganese

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FYPO:0003507 - normal growth on zinc

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FYPO:0000385 - normal macroautophagy

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FYPO:0004248 - normal protein localization to vacuolar membrane

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FYPO:0000703 - normal protein-protein interaction

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Genotypes:

FYPO:0004247 - normal vacuolar morphology during vegetative growth

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Genotypes:

FYPO:0001245 - sensitive to cobalt

Genes:

Genotypes:

FYPO:0006579 - sensitive to manganese

Genes:

Genotypes:

FYPO:0000116 - sensitive to zinc

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Genotypes:

FYPO:0006784 - tubular vacuole morphology during vegetative growth

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Genotypes: