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Reference - PMID:30652128 - Heterochromatin suppresses gross chromosomal rearrangements at centromeres by repressing Tfs1/TFIIS-dependent transcription.

Reference summary

PubMed ID
PMID:30652128
Title
Heterochromatin suppresses gross chromosomal rearrangements at centromeres by repressing Tfs1/TFIIS-dependent transcription.
Authors
Okita AK, Zafar F, Su J, Weerasekara D, Kajitani T, Takahashi TS, Kimura H, Murakami Y, Masukata H, Nakagawa T
Citation
Commun Biol 2019;2:17
Publication year
2019
Abstract
Heterochromatin, characterized by histone H3 lysine 9 (H3K9) methylation, assembles on repetitive regions including centromeres. Although centromeric heterochromatin is important for correct segregation of chromosomes, its exact role in maintaining centromere integrity remains elusive. Here, we found in fission yeast that heterochromatin suppresses gross chromosomal rearrangements (GCRs) at centromeres. Mutations in Clr4/Suv39 methyltransferase increased the formation of isochromosomes, whose breakpoints were located in centromere repeats. H3K9A and H3K9R mutations also increased GCRs, suggesting that Clr4 suppresses centromeric GCRs via H3K9 methylation. HP1 homologs Swi6 and Chp2 and the RNAi component Chp1 were the chromodomain proteins essential for full suppression of GCRs. Remarkably, mutations in RNA polymerase II (RNAPII) or Tfs1/TFIIS, the transcription factor that facilitates restart of RNAPII after backtracking, specifically bypassed the requirement of Clr4 for suppressing GCRs. These results demonstrate that heterochromatin suppresses GCRs by repressing Tfs1-dependent transcription of centromere repeats.

Annotation

Multi-locus phenotype

FYPO:0005554 - abolished histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0004745 - abolished histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006813 - abolished histone H3-K9 trimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0005843 - abolished histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000878 - decreased histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

Genes:

Genotypes:

FYPO:0001740 - increased gross chromosomal rearrangement

Genes:

Genotypes:

FYPO:0006815 - increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000966 - increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006681 - increased histone H3-K9 acetylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006814 - increased histone H3-K9 acetylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

Genes:

Genotypes:

FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

Genes:

Genotypes:

FYPO:0000964 - normal growth on thiabendazole

Genes:

Genotypes:

FYPO:0000863 - normal histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes:

Single locus phenotype

FYPO:0005554 - abolished histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0004745 - abolished histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006813 - abolished histone H3-K9 trimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0005843 - abolished histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006810 - decreased gross chromosomal rearrangement

Genes:

Genotypes:

FYPO:0000878 - decreased histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000884 - decreased histone H3-K9 trimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0005167 - decreased protein localization to chromatin at centromere inner repeat

Genes:

Genotypes:

FYPO:0006818 - decreased protein localization to chromatin at centromere outer repeat

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

Genes:

Genotypes:

FYPO:0001740 - increased gross chromosomal rearrangement

Genes:

Genotypes:

FYPO:0006815 - increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000966 - increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006681 - increased histone H3-K9 acetylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006814 - increased histone H3-K9 acetylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0001742 - increased isochromosome formation

Genes:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

Genes:

Genotypes:

FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

Genes:

Genotypes:

FYPO:0006811 - normal gross chromosomal rearrangement frequency

Genes:

Genotypes:

FYPO:0000964 - normal growth on thiabendazole

Genes:

Genotypes:

FYPO:0006817 - normal histone H3-K14 acetylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0003574 - normal histone H3-K14 acetylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006816 - normal histone H3-K9 acetylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0003575 - normal histone H3-K9 acetylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000863 - normal histone H3-K9 dimethylation at centromere inner repeat during vegetative growth

Genes:

Genotypes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes: