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Reference - PMID:31010807 - Structure of Fission Yeast Transcription Factor Pho7 Bound to pho1 Promoter DNA and Effect of Pho7 Mutations on DNA Binding and Phosphate Homeostasis.

Reference summary

PubMed ID
PMID:31010807
Title
Structure of Fission Yeast Transcription Factor Pho7 Bound to pho1 Promoter DNA and Effect of Pho7 Mutations on DNA Binding and Phosphate Homeostasis.
Authors
Garg A, Goldgur Y, Sanchez AM, Schwer B, Shuman S
Citation
Mol Cell Biol 2019 Jul 01;39(13)
Publication year
2019
Abstract
Pho7 is the Schizosaccharomyces pombe fission yeast Zn 2 Cys 6 transcriptional factor that drives a response to phosphate starvation in which phosphate acquisition genes are upregulated. Here we report a crystal structure at 1.6-Å resolution of the Pho7 DNA-binding domain (DBD) bound at its target site 2 in the pho1 promoter (5'-TCGGAAATTAAAAA). Comparison to the previously reported structure of Pho7 DBD in complex with its binding site in the tgp1 promoter (5'-TCGGACATTCAAAT) reveals shared determinants of target site specificity as well as variations in the protein-DNA interface that accommodate different promoter DNA sequences. Mutagenesis of Pho7 amino acids at the DNA interface identified nucleobase contacts at the periphery of the footprint that are essential for the induction of pho1 expression in response to phosphate starvation and for Pho7 binding to site 1 in the pho1 promoter.

Annotation

GO molecular function

GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific

Genes:

GO:0001162 - RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

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Single locus phenotype

FYPO:0002003 - abolished RNA polymerase II proximal promoter sequence-specific DNA binding

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Genotypes:

FYPO:0001045 - decreased acid phosphatase activity

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Genotypes:

FYPO:0006658 - decreased acid phosphatase activity during cellular response to phosphate starvation

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Genotypes:

FYPO:0004416 - decreased RNA level during cellular response to phosphate starvation

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Genotypes:

FYPO:0004142 - decreased RNA polymerase II proximal promoter sequence-specific DNA binding

Genes:

Genotypes:

FYPO:0003267 - normal acid phosphatase activity

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Genotypes:

FYPO:0004417 - normal RNA level during cellular response to phosphate starvation

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Genotypes:

FYPO:0001357 - normal vegetative cell population growth

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Genotypes: