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Reference - PMID:31262821 - Replication fork stalling elicits chromatin compaction for the stability of stalling replication forks.

Reference summary

PubMed ID
PMID:31262821
Title
Replication fork stalling elicits chromatin compaction for the stability of stalling replication forks.
Authors
Feng G, Yuan Y, Li Z, Wang L, Zhang B, Luo J, Ji J, Kong D
Citation
Proc Natl Acad Sci U S A 2019 Jul 16;116(29):14563-14572
Publication year
2019
Abstract
DNA replication forks in eukaryotic cells stall at a variety of replication barriers. Stalling forks require strict cellular regulations to prevent fork collapse. However, the mechanism underlying these cellular regulations is poorly understood. In this study, a cellular mechanism was uncovered that regulates chromatin structures to stabilize stalling forks. When replication forks stall, H2BK33, a newly identified acetylation site, is deacetylated and H3K9 trimethylated in the nucleosomes surrounding stalling forks, which results in chromatin compaction around forks. Acetylation-mimic H2BK33Q and its deacetylase clr6 - 1 mutations compromise this fork stalling-induced chromatin compaction, cause physical separation of replicative helicase and DNA polymerases, and significantly increase the frequency of stalling fork collapse. Furthermore, this fork stalling-induced H2BK33 deacetylation is independent of checkpoint. In summary, these results suggest that eukaryotic cells have developed a cellular mechanism that stabilizes stalling forks by targeting nucleosomes and inducing chromatin compaction around stalling forks. This mechanism is named the "Chromsfork" control: Chromatin Compaction Stabilizes Stalling Replication Forks.

Annotation

GO biological process

GO:0120292 - positive regulation of mitotic recombination-dependent replication fork processing

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GO molecular function

GO:0004407 - histone deacetylase activity

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Modification

MOD:00723 - N-acetylated L-lysine

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Multi-locus phenotype

FYPO:0010012 - increased histone H2B-K33 acetylation during vegetative growth

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FYPO:0010016 - increased replication fork stalling during cellular response to DNA damage

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FYPO:0000085 - sensitive to camptothecin

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FYPO:0000088 - sensitive to hydroxyurea

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FYPO:0000089 - sensitive to methyl methanesulfonate

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Single locus phenotype

FYPO:0006321 - decreased protein localization to chromatin at stalled replication fork

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FYPO:0001128 - decreased septation index

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FYPO:0010011 - increased DNA damage at rDNA during vegetative growth

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FYPO:0010012 - increased histone H2B-K33 acetylation during vegetative growth

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FYPO:0002095 - increased protein phosphorylation during cellular response to DNA damage

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FYPO:0007814 - increased rate of mitotic DNA replication elongation during cellular response to hydroxyurea

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FYPO:0010016 - increased replication fork stalling during cellular response to DNA damage

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FYPO:0001690 - normal growth on camptothecin

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FYPO:0000963 - normal growth on hydroxyurea

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FYPO:0000957 - normal growth on methyl methanesulfonate

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FYPO:0010017 - normal histone H2B-K33 acetylation during vegetative growth

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FYPO:0005236 - normal protein localization to chromatin at stalled replication fork

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FYPO:0001903 - normal septation index

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FYPO:0000085 - sensitive to camptothecin

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FYPO:0000088 - sensitive to hydroxyurea

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Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

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