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Reference - PMID:32101745 - Dense Transposon Integration Reveals Essential Cleavage and Polyadenylation Factors Promote Heterochromatin Formation.

Reference summary

PubMed ID
PMID:32101745
Title
Dense Transposon Integration Reveals Essential Cleavage and Polyadenylation Factors Promote Heterochromatin Formation.
Authors
Lee SY, Hung S, Esnault C, Pathak R, Johnson KR, Bankole O, Yamashita A, Zhang H, Levin HL
Citation
Cell Rep 2020 Feb 25;30(8):2686-2698.e8
Publication year
2020
Abstract
Heterochromatin functions as a scaffold for factors responsible for gene silencing and chromosome segregation. Heterochromatin can be assembled by multiple pathways, including RNAi and RNA surveillance. We identified factors that form heterochromatin using dense profiles of transposable element integration in Schizosaccharomyces pombe. The candidates include a large number of essential proteins such as four canonical mRNA cleavage and polyadenylation factors. We find that Iss1, a subunit of the poly(A) polymerase module, plays a role in forming heterochromatin in centromere repeats that is independent of RNAi. Genome-wide maps reveal that Iss1 accumulates at genes regulated by RNA surveillance. Iss1 interacts with RNA surveillance factors Mmi1 and Rrp6, and importantly, Iss1 contributes to RNA elimination that forms heterochromatin at meiosis genes. Our profile of transposable element integration supports the model that a network of mRNA cleavage and polyadenylation factors coordinates RNA surveillance, including the mechanism that forms heterochromatin at meiotic genes.

Annotation

GO biological process

GO:0180010 - co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway

Genes:

GO:0071031 - nuclear mRNA surveillance of mRNA 3'-end processing

Genes:

GO:0031508 - pericentric heterochromatin formation

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GO cellular component

GO:0000785 - chromatin

Genes:

GO:1990251 - nuclear exosome focus

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Multi-locus phenotype

FYPO:0004170 - abolished histone H3-K9 dimethylation at centromere during vegetative growth

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

Single locus phenotype

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0007213 - decreased histone H3-K9 dimethylation at heterochromatin island during vegetative growth

Genes:

Genotypes:

FYPO:0001645 - decreased protein-protein interaction

Genes:

Genotypes:

FYPO:0005420 - increased level of iron assimilation gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0002173 - increased level of meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0003049 - increased transcriptional readthrough

Genes:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

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Genotypes: