PomBase home

Reference - PMID:32295063 - The Catalytic-Dependent and -Independent Roles of Lsd1 and Lsd2 Lysine Demethylases in Heterochromatin Formation in Schizosaccharomyces pombe .

Reference summary

PubMed ID
PMID:32295063
Title
The Catalytic-Dependent and -Independent Roles of Lsd1 and Lsd2 Lysine Demethylases in Heterochromatin Formation in Schizosaccharomyces pombe .
Authors
Marayati BF, Tucker JF, Cerda DA, Hou TC, Chen R, Sugiyama T, Pease JB, Zhang K
Citation
Cells 2020 Apr 13;9(4)
Publication year
2020
Abstract
In eukaryotes, heterochromatin plays a critical role in organismal development and cell fate acquisition, through regulating gene expression. The evolutionarily conserved lysine-specific demethylases, Lsd1 and Lsd2, remove mono- and dimethylation on histone H3, serving complex roles in gene expression. In the fission yeast Schizosaccharomyces pombe , null mutations of Lsd1 and Lsd2 result in either severe growth defects or inviability, while catalytic inactivation causes minimal defects, indicating that Lsd1 and Lsd2 have essential functions beyond their known demethylase activity. Here, we show that catalytic mutants of Lsd1 or Lsd2 partially assemble functional heterochromatin at centromeres in RNAi-deficient cells, while the C-terminal truncated alleles of Lsd1 or Lsd2 exacerbate heterochromatin formation at all major heterochromatic regions, suggesting that Lsd1 and Lsd2 repress heterochromatic transcripts through mechanisms both dependent on and independent of their catalytic activities. Lsd1 and Lsd2 are also involved in the establishment and maintenance of heterochromatin. At constitutive heterochromatic regions, Lsd1 and Lsd2 regulate one another and cooperate with other histone modifiers, including the class II HDAC Clr3 and the Sirtuin family protein Sir2 for gene silencing, but not with the class I HDAC Clr6. Our findings explore the roles of lysine-specific demethylases in epigenetic gene silencing at heterochromatic regions.

Annotation

GO biological process

GO:0031508 - pericentric heterochromatin formation

Genes:

GO:0030466 - silent mating-type cassette heterochromatin formation

Genes:

GO:0031509 - subtelomeric heterochromatin formation

Genes:

GO cellular component

GO:0005634 - nucleus

Genes:

Multi-locus phenotype

FYPO:0000082 - decreased cell population growth at high temperature

Genes:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0007478 - decreased epigenetic heterochromatin inheritance

Genes:

Genotypes:

FYPO:0005922 - decreased heterochromatin assembly at subtelomere

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0004137 - decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

Genes:

Genotypes:

FYPO:0004085 - decreased vegetative cell growth

Genes:

Genotypes:

FYPO:0007339 - increased cen-dg RNA level

Genes:

Genotypes:

FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006987 - increased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0006361 - increased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

Genes:

Genotypes:

FYPO:0006110 - increased silent mating-type cassette transcript-derived siRNA level

Genes:

Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

Genes:

Genotypes:

Single locus phenotype

FYPO:0001424 - abolished protein localization to nucleus during vegetative growth

Genes:

Genotypes:

FYPO:0000134 - branched, elongated, multiseptate cell

Genes:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

Genes:

Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0007478 - decreased epigenetic heterochromatin inheritance

Genes:

Genotypes:

FYPO:0005922 - decreased heterochromatin assembly at subtelomere

Genes:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

Genes:

Genotypes:

FYPO:0004137 - decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

Genes:

Genotypes:

FYPO:0004202 - decreased spliced cen-dg RNA level

Genes:

Genotypes:

FYPO:0000584 - decreased sporulation frequency

Genes:

Genotypes:

FYPO:0004085 - decreased vegetative cell growth

Genes:

Genotypes:

FYPO:0007339 - increased cen-dg RNA level

Genes:

Genotypes:

FYPO:0004689 - increased cenH-derived RNA level

Genes:

Genotypes:

FYPO:0006299 - increased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0000887 - increased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0006361 - increased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

Genes:

Genotypes:

FYPO:0006110 - increased silent mating-type cassette transcript-derived siRNA level

Genes:

Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

Genes:

Genotypes:

FYPO:0004573 - increased telomeric transcript level

Genes:

Genotypes:

FYPO:0002151 - inviable spore

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

FYPO:0001252 - multinucleate multiseptate vegetative cell

Genes:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

Genes:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

Genes:

Genotypes:

FYPO:0004121 - normal protein import into nucleus during vegetative growth

Genes:

Genotypes: