PomBase home

Reference - PMID:32366382 - Spt5 Phosphorylation and the Rtf1 Plus3 Domain Promote Rtf1 Function through Distinct Mechanisms.

Reference summary

PubMed ID
PMID:32366382
Title
Spt5 Phosphorylation and the Rtf1 Plus3 Domain Promote Rtf1 Function through Distinct Mechanisms.
Authors
Chen JJ, Mbogning J, Hancock MA, Majdpour D, Madhok M, Nassour H, Dallagnol JC, Pagé V, Chatenet D, Tanny JC
Citation
Mol Cell Biol 2020 Jul 14;40(15)
Publication year
2020
Abstract
Rtf1 is a conserved RNA polymerase II (RNAPII) elongation factor that promotes cotranscriptional histone modification, RNAPII transcript elongation, and mRNA processing. Rtf1 function requires the phosphorylation of Spt5, an essential RNAPII processivity factor. Spt5 is phosphorylated within its C-terminal domain (CTD) by cyclin-dependent kinase 9 (Cdk9), the catalytic component of positive transcription elongation factor b (P-TEFb). Rtf1 recognizes phosphorylated Spt5 (pSpt5) through its Plus3 domain. Since Spt5 is a unique target of Cdk9 and Rtf1 is the only known pSpt5-binding factor, the Plus3/pSpt5 interaction is thought to be a key Cdk9-dependent event regulating RNAPII elongation. Here, we dissect Rtf1 regulation by pSpt5 in the fission yeast Schizosaccharomyces pombe We demonstrate that the Plus3 domain of Rtf1 (Prf1 in S. pombe ) and pSpt5 are functionally distinct and that they act in parallel to promote Prf1 function. This alternate Plus3 domain function involves an interface that overlaps the pSpt5-binding site and that can interact with single-stranded nucleic acid or with the polymerase-associated factor (PAF) complex in vitro We further show that the C-terminal region of Prf1, which also interacts with PAF, has a similar parallel function with pSpt5. Our results elucidate unexpected complexity underlying Cdk9-dependent pathways that regulate transcription elongation.

Annotation

GO molecular function

GO:0000405 - bubble DNA binding

Genes:

GO:0005515 - protein binding

Genes:

GO:0003723 - RNA binding

Genes:

GO:0003697 - single-stranded DNA binding

Genes:

Multi-locus phenotype

FYPO:0000132 - abnormal septum disassembly

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0000118 - multiseptate vegetative cell

Genes:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes:

Single locus phenotype

FYPO:0000132 - abnormal septum disassembly

Genes:

Genotypes:

FYPO:0002922 - abolished histone H2B-K119 ubiquitination during vegetative growth

Genes:

Genotypes:

FYPO:0007386 - decreased histone H2B-K119 ubiquitination during vegetative growth

Genes:

Genotypes:

FYPO:0000835 - decreased protein level

Genes:

Genotypes:

FYPO:0006631 - decreased protein localization to chromatin

Genes:

Genotypes:

FYPO:0001645 - decreased protein-protein interaction

Genes:

Genotypes:

FYPO:0004385 - decreased single-stranded DNA binding

Genes:

Genotypes:

FYPO:0000118 - multiseptate vegetative cell

Genes:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes: