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Reference - PMID:33468217 - Rbm10 facilitates heterochromatin assembly via the Clr6 HDAC complex.

Reference summary

PubMed ID
PMID:33468217
Title
Rbm10 facilitates heterochromatin assembly via the Clr6 HDAC complex.
Authors
Weigt M, Gao Q, Ban H, He H, Mastrobuoni G, Kempa S, Chen W, Li F
Citation
Epigenetics Chromatin 2021 Jan 19;14(1):8
Publication year
2021
Abstract
Splicing factors have recently been shown to be involved in heterochromatin formation, but their role in controlling heterochromatin structure and function remains poorly understood. In this study, we identified a fission yeast homologue of human splicing factor RBM10, which has been linked to TARP syndrome. Overexpression of Rbm10 in fission yeast leads to strong global intron retention. Rbm10 also interacts with splicing factors in a pattern resembling that of human RBM10, suggesting that the function of Rbm10 as a splicing regulator is conserved. Surprisingly, our deep-sequencing data showed that deletion of Rbm10 caused only minor effect on genome-wide gene expression and splicing. However, the mutant displays severe heterochromatin defects. Further analyses indicated that the heterochromatin defects in the mutant did not result from mis-splicing of heterochromatin factors. Our proteomic data revealed that Rbm10 associates with the histone deacetylase Clr6 complex and chromatin remodelers known to be important for heterochromatin silencing. Deletion of Rbm10 results in significant reduction of Clr6 in heterochromatin. Our work together with previous findings further suggests that different splicing subunits may play distinct roles in heterochromatin regulation.

Annotation

GO biological process

GO:0031445 - regulation of heterochromatin formation

Genes:

GO:1905744 - regulation of mRNA cis splicing, via spliceosome

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GO cellular component

GO:0005634 - nucleus

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Qualitative gene expression

PomGeneEx:0000018 - protein level increased

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Single locus phenotype

FYPO:0003044 - abnormal heterochromatin assembly

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FYPO:0000141 - abnormal mitotic sister chromatid segregation

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FYPO:0000189 - abnormal mRNA splicing, via spliceosome

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FYPO:0001512 - branched, elongated cell

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0004604 - decreased chromatin silencing at subtelomere

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FYPO:0003096 - decreased histone H3-K9 methylation at centromere outer repeat during vegetative growth

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FYPO:0003572 - decreased histone H3-K9 methylation at subtelomeric heterochromatin during vegetative growth

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FYPO:0003029 - decreased mRNA splicing, via spliceosome

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FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

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FYPO:0001355 - decreased vegetative cell population growth

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FYPO:0001919 - fragmented nucleus during vegetative growth

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FYPO:0001357 - normal vegetative cell population growth

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