PomBase home

Reference - PMID:33574613 - TOR targets an RNA processing network to regulate facultative heterochromatin, developmental gene expression and cell proliferation.

Reference summary

PubMed ID
PMID:33574613
Title
TOR targets an RNA processing network to regulate facultative heterochromatin, developmental gene expression and cell proliferation.
Authors
Wei Y, Lee NN, Pan L, Dhakshnamoorthy J, Sun LL, Zofall M, Wheeler D, Grewal SIS
Citation
Nat Cell Biol 2021 Mar;23(3):243-256
Publication year
2021
Abstract
Cell proliferation and differentiation require signalling pathways that enforce appropriate and timely gene expression. We find that Tor2, the catalytic subunit of the TORC1 complex in fission yeast, targets a conserved nuclear RNA elimination network, particularly the serine and proline-rich protein Pir1, to control gene expression through RNA decay and facultative heterochromatin assembly. Phosphorylation by Tor2 protects Pir1 from degradation by the ubiquitin-proteasome system involving the polyubiquitin Ubi4 stress-response protein and the Cul4-Ddb1 E3 ligase. This pathway suppresses widespread and untimely gene expression and is critical for sustaining cell proliferation. Moreover, we find that the dynamic nature of Tor2-mediated control of RNA elimination machinery defines gene expression patterns that coordinate fundamental chromosomal events during gametogenesis, such as meiotic double-strand-break formation and chromosome segregation. These findings have important implications for understanding how the TOR signalling pathway reprogrammes gene expression patterns and contributes to diseases such as cancer.

Annotation

GO biological process

GO:0033621 - nuclear mRNA surveillance of meiosis-specific transcripts

Genes:

GO:0120272 - positive regulation of nuclear mRNA surveillance of meiosis-specific transcripts

Genes:

GO cellular component

GO:0080008 - Cul4-RING E3 ubiquitin ligase complex

Genes:

GO molecular function

GO:0004674 - protein serine/threonine kinase activity

Genes:

Modification

MOD:00696 - phosphorylated residue

Genes:

MOD:01148 - ubiquitinylated lysine

Genes:

Multi-locus phenotype

FYPO:0007212 - decreased chromatin silencing at heterochromatin island

Genes:

Genotypes:

FYPO:0002768 - decreased protein ubiquitination during vegetative growth

Genes:

Genotypes:

FYPO:0002082 - increased protein ubiquitination during vegetative growth

Genes:

Genotypes:

FYPO:0007226 - normal chromatin silencing at heterochromatin island

Genes:

Genotypes:

FYPO:0007281 - normal level of meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0000833 - normal protein level during vegetative growth

Genes:

Genotypes:

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

Genes:

Single locus phenotype

FYPO:0004159 - abnormal homologous chromosome segregation

Genes:

Genotypes:

FYPO:0003066 - abnormal sporulation resulting in formation of ascus with fewer than four spores

Genes:

Genotypes:

FYPO:0002033 - abolished protein phosphorylation during vegetative growth

Genes:

Genotypes:

FYPO:0007213 - decreased histone H3-K9 dimethylation at heterochromatin island during vegetative growth

Genes:

Genotypes:

FYPO:0003230 - decreased histone H3-K9 methylation at heterochromatin island during vegetative growth

Genes:

Genotypes:

FYPO:0005121 - decreased level of early meiotic gene mRNA during meiotic cell cycle

Genes:

Genotypes:

FYPO:0000485 - decreased meiotic recombination

Genes:

Genotypes:

FYPO:0001324 - decreased protein level during vegetative growth

Genes:

Genotypes:

FYPO:0001838 - decreased protein phosphorylation during vegetative growth

Genes:

Genotypes:

FYPO:0000581 - decreased spore germination frequency

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0004966 - increased duration of horsetail movement

Genes:

Genotypes:

FYPO:0003746 - increased histone H3-K9 methylation at heterochromatin island during vegetative growth

Genes:

Genotypes:

FYPO:0002173 - increased level of meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0007686 - increased number of nuclear exosome foci

Genes:

Genotypes:

FYPO:0006542 - increased RNA level during mitosis

Genes:

Genotypes:

FYPO:0007685 - increased vegetative cell population growth during nutrient starvation

Genes:

Genotypes:

FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0000833 - normal protein level during vegetative growth

Genes:

Genotypes:

FYPO:0007687 - normal protein localization to nuclear exosome focus during meiosis

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes: